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Report for Sequence Feature Glyma02g34171

Feature Type:gene_model
Chromosome:Gm02
Start:38369547
stop:38370126
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g34171
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATMG00370AT Annotation by Michelle Graham. TAIR10: Ycf1 protein | chrM:104954-105553 REVERSE LENGTH=199 SoyBaseE_val: 9.00E-26ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PF05758PFAM Ycf1 JGI ISS
UniRef100_C6TAM4UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=C6TAM4_SOYBN SoyBaseE_val: 2.00E-49ISS
UniRef100_I2E2U4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hypothetical chloroplast RF19 n=1 Tax=Vigna unguiculata RepID=I2E2U4_VIGUN SoyBaseE_val: 5.00E-24ISS

Expression Patterns of Glyma02g34171
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g34171 not represented in the dataset
Glyma02g34171 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34171 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g189000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g34171
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g34171
>Glyma02g34171.1   sequence type=CDS   gene model=Glyma02g34171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATTTTGGAAAATGGAAAGTTGAAAAATCGTTATATAATAATCCAAAAATTGCAATAGAAAAAGAATCCAGAAATTGGAATAGAAAAGAAAAAGAGAGGTTTGAGATGATTTTTCAATCTTTTATACTGGATAATCTAGTATTCTTATGCATGAAGATAATTAATTCGATAGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTTTCCATAGGGCCCTCTTATCTCTTCCTTCTTCGAGCTAGGCTTGTGGAAGAATTATCTAAAAGAGGAGCAAGCTATAGAGAAAGCGAAGCAACACAATTAACATGA
Predicted protein sequences of Glyma02g34171
>Glyma02g34171.1   sequence type=predicted peptide   gene model=Glyma02g34171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENFGKWKVEKSLYNNPKIAIEKESRNWNRKEKERFEMIFQSFILDNLVFLCMKIINSIVVVGLYYGFLTTFSIGPSYLFLLRARLVEELSKRGASYRESEATQLT*






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