SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G41370 | AT | Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491 | SoyBase | E_val: 0 | ISS |
| GO:0009864 | GO-bp | Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0009954 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation | SoyBase | N/A | ISS |
| GO:0010227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ abscission | SoyBase | N/A | ISS |
| GO:0010254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nectary development | SoyBase | N/A | ISS |
| GO:0010434 | GO-bp | Annotation by Michelle Graham. GO Biological Process: bract formation | SoyBase | N/A | ISS |
| GO:0010582 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR24188 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| PF00651 | PFAM | BTB/POZ domain | JGI | ISS | |
| PF11900 | PFAM | Domain of unknown function (DUF3420) | JGI | ISS | |
| UniRef100_B9H966 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BOP/NPR1/NIM1-like regulatory protein n=1 Tax=Populus trichocarpa RepID=B9H966_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_F6HLP4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HLP4_VITVI | SoyBase | E_val: 0 | ISS |
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Glyma02g34135 not represented in the dataset |
Glyma02g34135 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g188700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g34135.1 sequence type=CDS gene model=Glyma02g34135 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCCAGGAAGAGTCTCAAAGATCTCTCTCCATGGACTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGCCGTCTGGTCCACGGGCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGGAAATTCTTCTGCGGACCGGACCCGCCGACCGGCCTCGACCCCGCCGGCGCGTCGCGATCGAACGACACCGGGGCGGCGGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCGGTGGGGTACGAGGTGTTCCTGCTGCTGCTGCAGTTCCTGTACAGCGGGCAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACCCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCGAGCATGGTAGAGAAAGCCTCAATCGACGATGTGATGAAAGTGCTGATAGCGTCTCGAAAGCAAGAGATGCAGCAGCTGTGGAGCACGTGTTCCCACCTGGTGGCGAAGTCGGGTCTCCCTCCGGAGGTGTTGGCAAAGCACCTCCCCATCGATGTGGTGGCGAAGATCGAAGAGCTCCGTCTCAAATCCTCCCTCGCGCGCCGCTCTCTGCTGCCCGGCCACCACCAGCACCACCACGACCTCACCCCAGGCATGGAGGACCAGAAAATCCAGCGAATGCGGCGCGCCCTCGACTCCTCCGACGTCGAACTCGTCAAGCTCATGGTCATGGGCGAGGGTCTCAACCTGGACGAGGCGCTCGCGTTGCACTACGCAGTGGAAAATTGCAGCAGGGAAGTCGTGAAGGCGCTGCTCGAATTGGGGGCCGCGGACGTCAACTTCCCCGCCGGCCCCGCCGGGAAAACGCCCCTGCACGTGGCCGCCGAGATGGTATTGCCGGAGATGGTGGCGGTGCTGCTGGACCACCACGCTGACCCCAACGTCCGAACTGTGGAGGGCGTGACCCCTTTGGACATCCTCAGAACCCTAACCTCGGACTTCCTCTTCAGAGGGGCTGTCCCTGGACTCACCCACATTGAGCCCAACAAGCTCCGCCTCTGCTTGGAGCTTGTGCAATCCGCGGCTCTTGTTTTGTCCCGTGAAGAAGGGAACAATGTCAACAACGACCATAACAACAACGCTTCTGCTTCTGCTACTGCCATTTATCCGCCAATGAGCAGCGAAGACCACAGCAGCGGCAATTCGGACTCCAGGTTGGTGTATCTCAACCTCGGTGCCACGCCACCAATGGGTGAGGACGATGGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGCCGATGTGACCCACCATCAATGTACCATCACTCTCATGACTTCTAG
>Glyma02g34135.1 sequence type=predicted peptide gene model=Glyma02g34135 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQEESQRSLSMDYLNLLINGQAFSDVTFQVEGRLVHGHRCILAARSLFFRKFFCGPDPPTGLDPAGASRSNDTGAAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLLPGHHQHHHDLTPGMEDQKIQRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVLPEMVAVLLDHHADPNVRTVEGVTPLDILRTLTSDFLFRGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNVNNDHNNNASASATAIYPPMSSEDHSSGNSDSRLVYLNLGATPPMGEDDGSQREAMNRHGSQGGRCDPPSMYHHSHDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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