SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g34080

Feature Type:gene_model
Chromosome:Gm02
Start:38095238
stop:38095887
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g34080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50180AT Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857 SoyBaseE_val: 2.00E-29ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF121Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_C6FF62UniRef Annotation by Michelle Graham. Most informative UniRef hit: CC-NBS-LRR class disease resistance protein n=1 Tax=Glycine max RepID=C6FF62_SOYBN SoyBaseE_val: 4.00E-119ISS
UniRef100_I1MH59UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH59_SOYBN SoyBaseE_val: 4.00E-119ISS

Expression Patterns of Glyma02g34080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g188400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g34080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g34080
>Glyma02g34080.1   sequence type=CDS   gene model=Glyma02g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGGGCTATAGTGAACTTCATTGTGCAAAGTCTTGGTGATTTGCTCATTCAAGAAGGAATGTTCCTATATGGGGTGGAAGACAAAGTGTTGCAACTGCAAACTAAATTGAGGATGATGAGGTCTTACTTGCAAGTTGCAGATAGAAAGCAAGATGGTAATGAAAGCCTAAGGAATTGGATTTCAAAAATCGGAGAAGCTGCTTATGATTCTGATGATGTCATTGAGTCATATGCCCTCAGAGGAGCTTCAAGAAGAAATTTGACTGGTGTTTTGAGCCTCATCAAAAGGTATGCTTTAAACATCAACAAATTCATAGAAACCCACAAGGTGGGATCTCATGTTGATAATGTCATAGCTAGGATTTCTAGCCTCACAAGGAGTTTGGAAACTTATGACATAAGGCCTGAGGAAGGAGAAGCCTCAAATTCTATGCATGGGAAGCAAAGATCTTTGAGCTCCTACTCACATGTTATTGAAGATGACATAATTGGTGTTCAAGATGATGTTAGGATTTTGGAGTTATGTTTGGTTGACCCCAACAAAGGCTATAGAGTAGTAGCCATTTGTGGAATCGGGGGATACAAGAAACAAAATACGAGCTCTCCACTACTCTAA
Predicted protein sequences of Glyma02g34080
>Glyma02g34080.1   sequence type=predicted peptide   gene model=Glyma02g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRAIVNFIVQSLGDLLIQEGMFLYGVEDKVLQLQTKLRMMRSYLQVADRKQDGNESLRNWISKIGEAAYDSDDVIESYALRGASRRNLTGVLSLIKRYALNINKFIETHKVGSHVDNVIARISSLTRSLETYDIRPEEGEASNSMHGKQRSLSSYSHVIEDDIIGVQDDVRILELCLVDPNKGYRVVAICGIGGYKKQNTSSPLL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo