Glyma02g34070 - SoyBase

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Report for Sequence Feature Glyma02g34070

Feature Type:	gene_model
Chromosome:	Gm02
Start:	38085734
stop:	38105162
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g34070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06530	AT	Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein \| chr5:1990060-1994605 REVERSE LENGTH=751	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0010148	GO-bp	Annotation by Michelle Graham. GO Biological Process: transpiration	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0061	KOG	Transporter, ABC superfamily (Breast cancer resistance protein)	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF23	Panther	STEROLIN-2 RELATED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
UniRef100_B9IIG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9IIG9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1L9P9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9P9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g34070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g188300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g34070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g34070

Limit To All Plant Sequences

>Glyma02g34070.2   sequence type=CDS   gene model=Glyma02g34070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAGCAAATACATCACTAGTGAGAACAAAATCAGACCAACTAGTGGAGTCGATGGTGGCGGCCCTGAAGTCGCCAGCATCGAGCGACCACTCCGCGAACGGGGTGGTTGAAGGCGGGGGGACCATCTCCAGGAAGTCGAGCCGGCGGCTGACGGGGGCGTCACCGGGGCGCGGCGGGAAGAACACGCACATAAGGAAGTCTAGGAGTGCTCAGATAAGTCAAATGAAGCTGGAGCTCGATGATGTGAGTAGTGGTGCCGCACTTAGCAGAGCCTCAAGTGCTAGCTTGGGACTCTCTTTCTCCTTCACTGGCTTCACTATGCCTCCTGAGGAAATTGCAGACTCCAAGCCCTTCAGTGATGATGATATCCCTGAGGATATTGAATCTGGACCTAGGACGAAGTTTCAAACAGAACCTACTCTACCAATATATCTAAAGTTCACGGATGTGACCTACAAGATAGTGATCAAGGGCATGACAACAACTGAGGAGAAGGATATCTTGAATGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTCTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAACTCTTTTAAACCTTCTTGGAGGCAGGTTAAGCCATCCTATAAGTGGTGGTTCTATCACATACAATGACCAACCATATTCTAAGTTTCTTAAGAGCAGGATAGGATTCGTGACACAAGATGATGTTCTGTTTCCTCACCTAACTGTGAAAGAGACATTGACATACGCAGCCAGACTAAGATTACCAAAGACATACACAAAGGAGCAAAAGGAGAAACGAGCTTTAGATGTAATCTATGAGCTTGGCTTGGAGAGGTGCCAAGACACTATGATTGGTGGTTCCTTTGTTCGCGGAGTATCTGGTGGTGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCTCTTCTTTTTCTTGATGAACCAACATCTGGTTTGGATTCTACAACAGCCTTGAGGATTGTTCAGATGCTACAAGACATAGCAGAGGCTGGCAAAACAGTGGTGACAACAATTCACCAACCATCAAGCAGACTCTTTCACAAATTTGATAAATTGATCCTTCTTGGAAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGACTTACTTCCAGTCTATAGGATGTTCACCCCTTATTTCCATGAACCCAGCTGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAATGATGTTTCCCTACCTTCAGAGTTGGAAGATAAAGTGCAGATGGGAAATGCAGAAGCTGAAACACTAAATGGGAAGCCATCACCAGCAGTTGTACATGAGTACCTGGTGGAGGCATACGAAACTCGAGTAGCAGAAACAGAAAAGAAAAGACTAATGGTTCCTATACCCATTGATGAAGCACTGAAGACTAAGGTGTGTTCTCATAAGAGACAATGGGGAGCAAGTTGGGATGAGCAATATTCCATACTATTTTGGAGAGGAATCAAAGAACGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTTTATCCACTGCTGTCATCTTAGGATTACTCTGGTGGCAATCAGATACTAAGAACCCAAAAGATCTGCAAGATCAGGCAAGATTGCTATTCTTTATTGCGGTTTTCTGGGGATTTTTTCCTGTTTTCACTGCAATATTCACATTCCCTCAAGAGAGAGCCATGCTGAGTAAGGAGAGAGCAGCAGATATGTACAGATTGAGTGCATACTTCCTGGCTAGAACCACAAGTGACCTTCCACTAGACCTCATTTTACCAGTGCTTTTTCTGCTTGTTGTTTATTTCATGGCCGGTCTCAGACTCAGTGTTGCACCATTTTTCCTCACCATTCTTACTGTTTTCCTCTGCATTGTGGCTGCTCAGGGACTTGGACTTGCTATTGGAGCCACACTTATGGACTTGAAAAGAGCAACAACTTTGGCTTCAGTAACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTTGTGCAGAGAGTCCCCATATTTTTTTCTTGGATCCGGTACATGTCATTCAACTACCACACCTACAAGCTTCTGCTCAAGGTGCAATATGAACACATCTCACCAGTCATCAATGGAATGAGAATTGATAGTGGTGCAACAGAGGTAGCTGCTCTAATAGCCATGGTTTTTGGTTACCGTTTCTTGGCATATCTTTCTCTAAGGCGAATGAAACTTCAATCTGGAGCTTAA

Predicted protein sequences of Glyma02g34070

Limit To All Plant Sequences

>Glyma02g34070.2   sequence type=predicted peptide   gene model=Glyma02g34070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKANTSLVRTKSDQLVESMVAALKSPASSDHSANGVVEGGGTISRKSSRRLTGASPGRGGKNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEIADSKPFSDDDIPEDIESGPRTKFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEFLLDLANGNINDVSLPSELEDKVQMGNAEAETLNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPIDEALKTKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPKDLQDQARLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHISPVINGMRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA*

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