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Report for Sequence Feature Glyma02g34060

Feature Type:gene_model
Chromosome:Gm02
Start:38073960
stop:38083979
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g34060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06820AT Annotation by Michelle Graham. TAIR10: carotenoid isomerase | chr1:2093145-2096220 REVERSE LENGTH=595 SoyBaseE_val: 0ISS
GO:0009662GO-bp Annotation by Michelle Graham. GO Biological Process: etioplast organization SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016853GO-mf Annotation by Michelle Graham. GO Molecular Function: isomerase activity SoyBaseN/AISS
GO:0046608GO-mf Annotation by Michelle Graham. GO Molecular Function: carotenoid isomerase activity SoyBaseN/AISS
KOG4254 KOG Phytoene desaturase JGI ISS
PTHR10668Panther PHYTOENE DEHYDROGENASE JGI ISS
PTHR10668:SF5Panther PHYTOENE DEHYDROGENASE-RELATED JGI ISS
PF00890PFAM FAD binding domain JGI ISS
UniRef100_B9SDN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carotenoid isomerase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SDN0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JGC5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGC5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g34060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g188200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g34060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g34060
>Glyma02g34060.1   sequence type=CDS   gene model=Glyma02g34060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAACGTTATCTGTCTTTCTCTCGGTAGGAATCAATTTTACAAGTCAGTGGAATCCACACTACCAACACCATTGCAAATTACAAAACATTTCCCCAACCTTCTATGCTAATGCCAATTTGTCACACCTCCACCAAAGCATAACAATGCTCAATTCCTCTTTCCTCTCCCTTTCTGAACACACCTTTTCCCACACACCCCATCATTTCCCAACAAGGTCTGCTTCTCAAAACCCCAACCTTCATCCAAAGTTTCAATCTTTAGCCTTTGGAAACCGTGGAGGGAGTGAATTTCCATCTGGGTCTTGCTCCAATACCCCCAGAAGAAAAGGGGTGTTGGTTGTGCGGTCAAAGTCAACGCTGGGAGTAGAAGAAGTGGTGGTAAAGGGAGGAGGAGTGAAGGGTAAGGGTGAAGAGTTTGATGCAATTGTGATAGGGTCTGGGATTGGAGGGTTGGTTGCAGGGACACAGCTGGCAGTGAAGGGTGCCAGAGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGGGTAATCTCAATTTGATAACTCAAGCGTTGGAAGCAGTTGGTTGTCGGATGCAAGTGGTGCCTGATCCAACAACCGTTCATTTCCATCTACCGAATAACCTTTCTGTTCGAGTGCACAAAGAATATGATAAATTCATTGAAGAACTGACCAGTTACTTTCCCCATGAAAAGGAGGGTATTCTTAAATTCTACGGTGAATGCTGGAAGATTTTCAATGCTCTGAATTCATTGGAATTGAAGTCACTAGAAGAGCCACTCTACCTTTTTGGACAGTTTTTTCGGAGGCCGCTTGAATGCTTGACCCTAGCCTATTATTTGCCTCAGAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGTGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACACCAATGATCAATGCTGCCATGGTTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGGGGTGTTGGTGGGATAGCAAAGTCCTTAGCAAAAGGTCTCGTTGATCAGGGTAGCGAGATAGTTTACAAAGCAAATGTCACCAGTATTATAATTGAGCAGGGCAAAGCTGTAGGTGTGAGGCTTTCAAATGGCAGAGAGTTCTTTGCCAAAACTATAATATCAAATGCTACCAGATGGGATACATTTGGAAAGTTACTGAAGGGCGTTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAAGCTGAGGTTTTGCCGCCAGATACAGACTGTCACCATTTTGTGCTTGAGAGCAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGGGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAAATCACAAGCAGATTAGAGAATAAATTGTTTCCTGGTCTTAGATCATCCATTGATTTTATGGAGGTAGGGACACCTAAGACACACCGGCGATACCTGGCTCGTGATGAGGGAACTTATGGTCCAATGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTGGTTGGTTAAGGACAATGGCATGA
Predicted protein sequences of Glyma02g34060
>Glyma02g34060.1   sequence type=predicted peptide   gene model=Glyma02g34060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTLSVFLSVGINFTSQWNPHYQHHCKLQNISPTFYANANLSHLHQSITMLNSSFLSLSEHTFSHTPHHFPTRSASQNPNLHPKFQSLAFGNRGGSEFPSGSCSNTPRRKGVLVVRSKSTLGVEEVVVKGGGVKGKGEEFDAIVIGSGIGGLVAGTQLAVKGARVLVLEKYVIPGGSSGFYQRDGYTFDVGSSVMFGFSDKGNLNLITQALEAVGCRMQVVPDPTTVHFHLPNNLSVRVHKEYDKFIEELTSYFPHEKEGILKFYGECWKIFNALNSLELKSLEEPLYLFGQFFRRPLECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINAAMVLCDRHFGGINYPLGGVGGIAKSLAKGLVDQGSEIVYKANVTSIIIEQGKAVGVRLSNGREFFAKTIISNATRWDTFGKLLKGVPLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLESNWSKLEEPYGSIFLSIPTVLDSSLAPEGRHILHIFTTSSMEDWEGLSRVEYEAKKQLVADEITSRLENKLFPGLRSSIDFMEVGTPKTHRRYLARDEGTYGPMPRRIPKGLLGMPFNTTGIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDSMLLRLLGWLRTMA*






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