SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06820 | AT | Annotation by Michelle Graham. TAIR10: carotenoid isomerase | chr1:2093145-2096220 REVERSE LENGTH=595 | SoyBase | E_val: 0 | ISS |
| GO:0009662 | GO-bp | Annotation by Michelle Graham. GO Biological Process: etioplast organization | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016853 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isomerase activity | SoyBase | N/A | ISS |
| GO:0046608 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carotenoid isomerase activity | SoyBase | N/A | ISS |
| KOG4254 | KOG | Phytoene desaturase | JGI | ISS | |
| PTHR10668 | Panther | PHYTOENE DEHYDROGENASE | JGI | ISS | |
| PTHR10668:SF5 | Panther | PHYTOENE DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00890 | PFAM | FAD binding domain | JGI | ISS | |
| UniRef100_B9SDN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carotenoid isomerase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SDN0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGC5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGC5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g34060 not represented in the dataset |
Glyma02g34060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g188200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g34060.1 sequence type=CDS gene model=Glyma02g34060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAACGTTATCTGTCTTTCTCTCGGTAGGAATCAATTTTACAAGTCAGTGGAATCCACACTACCAACACCATTGCAAATTACAAAACATTTCCCCAACCTTCTATGCTAATGCCAATTTGTCACACCTCCACCAAAGCATAACAATGCTCAATTCCTCTTTCCTCTCCCTTTCTGAACACACCTTTTCCCACACACCCCATCATTTCCCAACAAGGTCTGCTTCTCAAAACCCCAACCTTCATCCAAAGTTTCAATCTTTAGCCTTTGGAAACCGTGGAGGGAGTGAATTTCCATCTGGGTCTTGCTCCAATACCCCCAGAAGAAAAGGGGTGTTGGTTGTGCGGTCAAAGTCAACGCTGGGAGTAGAAGAAGTGGTGGTAAAGGGAGGAGGAGTGAAGGGTAAGGGTGAAGAGTTTGATGCAATTGTGATAGGGTCTGGGATTGGAGGGTTGGTTGCAGGGACACAGCTGGCAGTGAAGGGTGCCAGAGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGGGTAATCTCAATTTGATAACTCAAGCGTTGGAAGCAGTTGGTTGTCGGATGCAAGTGGTGCCTGATCCAACAACCGTTCATTTCCATCTACCGAATAACCTTTCTGTTCGAGTGCACAAAGAATATGATAAATTCATTGAAGAACTGACCAGTTACTTTCCCCATGAAAAGGAGGGTATTCTTAAATTCTACGGTGAATGCTGGAAGATTTTCAATGCTCTGAATTCATTGGAATTGAAGTCACTAGAAGAGCCACTCTACCTTTTTGGACAGTTTTTTCGGAGGCCGCTTGAATGCTTGACCCTAGCCTATTATTTGCCTCAGAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGTGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACACCAATGATCAATGCTGCCATGGTTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGGGGTGTTGGTGGGATAGCAAAGTCCTTAGCAAAAGGTCTCGTTGATCAGGGTAGCGAGATAGTTTACAAAGCAAATGTCACCAGTATTATAATTGAGCAGGGCAAAGCTGTAGGTGTGAGGCTTTCAAATGGCAGAGAGTTCTTTGCCAAAACTATAATATCAAATGCTACCAGATGGGATACATTTGGAAAGTTACTGAAGGGCGTTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAAGCTGAGGTTTTGCCGCCAGATACAGACTGTCACCATTTTGTGCTTGAGAGCAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGGGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAAATCACAAGCAGATTAGAGAATAAATTGTTTCCTGGTCTTAGATCATCCATTGATTTTATGGAGGTAGGGACACCTAAGACACACCGGCGATACCTGGCTCGTGATGAGGGAACTTATGGTCCAATGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTGGTTGGTTAAGGACAATGGCATGA
>Glyma02g34060.1 sequence type=predicted peptide gene model=Glyma02g34060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTLSVFLSVGINFTSQWNPHYQHHCKLQNISPTFYANANLSHLHQSITMLNSSFLSLSEHTFSHTPHHFPTRSASQNPNLHPKFQSLAFGNRGGSEFPSGSCSNTPRRKGVLVVRSKSTLGVEEVVVKGGGVKGKGEEFDAIVIGSGIGGLVAGTQLAVKGARVLVLEKYVIPGGSSGFYQRDGYTFDVGSSVMFGFSDKGNLNLITQALEAVGCRMQVVPDPTTVHFHLPNNLSVRVHKEYDKFIEELTSYFPHEKEGILKFYGECWKIFNALNSLELKSLEEPLYLFGQFFRRPLECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINAAMVLCDRHFGGINYPLGGVGGIAKSLAKGLVDQGSEIVYKANVTSIIIEQGKAVGVRLSNGREFFAKTIISNATRWDTFGKLLKGVPLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLESNWSKLEEPYGSIFLSIPTVLDSSLAPEGRHILHIFTTSSMEDWEGLSRVEYEAKKQLVADEITSRLENKLFPGLRSSIDFMEVGTPKTHRRYLARDEGTYGPMPRRIPKGLLGMPFNTTGIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDSMLLRLLGWLRTMA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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