Glyma02g33920 - SoyBase

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Report for Sequence Feature Glyma02g33920

Feature Type:	gene_model
Chromosome:	Gm02
Start:	37848195
stop:	37854257
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g33920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF02992	PFAM	Transposase family tnp2	JGI		ISS
UniRef100_C7FDI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TNP2 n=1 Tax=Glycine max RepID=C7FDI5_SOYBN	SoyBase	E_val: 8.00E-82	ISS
UniRef100_I1JGC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGC3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g33920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g33920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g33920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g33920

Limit To All Plant Sequences

>Glyma02g33920.1   sequence type=CDS   gene model=Glyma02g33920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTGGGTCCCAATCTGAACCGTTTGATGTAGAAATAGGAGATCACTTGGAGGATATGATTCGTGGCCTTGGACAAGAGTCTTTTCGGCAAGCACATGCCCCTATGTATGATACATTGCAAACTGATTCAAAGAAGCCTTTGTATCCGGGGTACAAGAATTCATTGATGCTGTTGTCAGTGATGTTAAGTCTGGTTAATGTCAAGGCCAGATATGGATGGAGTGACAAAATTTTTAGTTCGTTGCTTCAAGTAGTGCATGATCTGCTTCCAAAGGAAAACACATTACCTAAAAGTTACTATCAGGCCAAGAAGATACTGTGCCCGATGGGTATGGAGTATCAGAAGATTCATGCTTGCCCGAATGATTGCATACTGTACAAACATGAATTTCAAGAAATGCCCAAGTGCCCTAGGTTTAAGCATCTATTTGCTAATGGAGACAACGCAAAAGACCTTGCATGGCATGAAAATGGGAGAAACTGCGATGGAATGCTCCATCATCCGGCTAATTCCTCGCAGTGGAAGAAGATAGATCGTTTGTTTTTGGATTTCGGCAAAGAGGCAAGAAATCTTAGGCTTGGACTAGCCAGTGATGGAATGAATCCATATGGCAGTTTAAGCCCAAGACAGTCAGGAAATGACATTAATGTTTATCTAAGTTCGTTGATTGAAGACTTGACAAAGTTGTGGGATGAGGGGGTTTTACTGTTTGATGGGTTTCAGAATGAGACTTTTCAAATGCCTACAATGCTTTTTTGTCTTCCAACGGGTTCAACACCTGAATACTATATTTGGAAAGACCCAAAAGAAGCAAAAAATGTCATTGGGACGCTTATTAACATTCAAGGCAAGACGAAAGATGGTTTGAATACTCGTCAAGATCTAGTTGAGATGGATATACGATCGCAGTTTTATCCAAGCAAAGTCCTTGATCCTGTGAAGTTAGATAATTTGGAAAATGAGGTTGCAATTATACTATGGTATACCAAGAATCTACATTGTCCAGAAGCATCTATTGTTGAAAGGTACATTACAGAAGAAGCCATTGAATTTTGTTCAGAGTACATTGAAAAGGCTAAACCTATTGGGCTTCCCGAGTCTCGGCATGACGAAAGAGTGGGCGGTAAGGGTTCAAGAGGACTGCATGTTATCACTCCAACTGTAAAAGATTTGTTACAAGCTCACTTGTATGTGTTGAATAATAGTAATGAAGTTTTGTCATACATACTTCGACATGAAGGTTTAGTGAAAGAAAGTAATCCAAAAATGTCAAAGAACTGGGTTTTGAAAAAGCATAACAAGACTTTCCTAGATTGGTTTAAAGATACAATCTTTGCTGATGATAATGCTTCTGAAACGTTAAGAAAGCTAGCAGATGGGCCTAAAAGAAATGTTATAACTTGGCAAGGATACGATATAAACAAGTATTCCTTTTATAGAAGAGCACAAGATGAGAAAAGTACAATGCAAAACAGTGGGGTCACCCTAAGGGCTGAATCTCAACACTTCGCCAGTGTACATGATGACAATCCCTGTGTAGCTTCCATCCCTTACTTTGAGTTCATTGAAGAAATTTGGGAGCTTAACTATGTCAAATTTAATGTTTGTGTTTTCAAATGTAAATGGGTTGACAACAACACCAAACAAGCTAAACAGGTATTTTATGTTCAAGACCCTTGTGATGAAAGGTGTTTAGTGGTTCTACACGGGAAAACAATTGGTGTTAATGTTGAAGATGATGATTCATACATTGATACTTATGTTAGTCCTTTGCAAATGGCTACACCACCCAGCTCTCCTCCTCTTCCTCCTTCGACTGGTGCAGCATCACAGTCGCCATCTACCTTGAAGCGCACAAGAAACGCCACACGGCTAAGATCATTGGTGACTAGACCAGTTAGGGCAGAGAGACCGCTGGTCCATGTCGATCCTGCGACCGAGAAGGCCGACGAACCCCCACACCAACAAGGAAAGTGTCGACGACATTGTATGCCAAAAGTACGGCATTGGCAAGGAGAAATGGGTTCAATTTTGTCAGAGCCGCAGAGACCCTTCGTGGGAGGATGTGCGAAAAAAGGCACAGACACCGTGATTGATCCTCCTTCTCCCATCAAACGACACGGTTCCTTGGTCGCCCATGGACGTCAGGATGTACTGACTGCTGCCATTGGGCAACCAGAACACCCCGGTCGTGTGCGTGCTGCTGGAGCCGGTGTGACGATTAAGCAATACTATGGACTAGCTCCAAGGACCTCACGCACCCAGATGCAGTCCCAGTTTCAGTCACAGATGCAATCACAAGGACTTACACTGCCTCCTGAGCCTGAGGTTGGTCCTTCAGCTGCTCGTGCCAGCACAAAGGAGAGTTGTGTTGATCCCTCAGGGAACGATCCAGACACGGGTGCAGATACGGGTTGTACATCGAAGAAAATCCTCCCCATCTATGTTGAGGAGGTTAAAGATGCAGATGCTCCCATTCCTGTACCCACTGAAGAGTTTAAGTTAGTGGGGCAGACACTTAACACCTTCCTTGCTTGGCCGACACATCTCGTCAAGCATTTATCAGAACAGGGAGCTGTGGGACCAGCAAAACCTGCAGATAGGCCAGATCATGAGGTCGATGATCCCCTATATCTGATGACATTGACCATCCCACAACTTTTTCTAAAGCCATTGCAGGTTATGTGGGATGCTATAGTGTTTGGGGTGTTTAATGAAGACTTCCCCTTGTACATAAATCATGAAGATCTGTCTAAAATAGCACACGGTGGTCAATGTCTTAACATCTCTGTTATACAGTTATGGATTTTTGCTTTGAAAGGACTTAACGATATGTCACAACCTAAATCCAAGGTTGGTGCTAGGTGGATTGTTGTTAAATGTAATAGACAAAAAGGAAGTACTGAGTGTGACTATTACGTGATGCACTGGATGTCAACTATAATCTTAGGAAGTTTCAAGAATAATTGGGAAATGTATTTTAATGATGCTAGACCATTGGAATCAGAGAGATTGAAGGCGCTTCACATCCAGTGGGCAAAGTATTATCTCAAAGTTAGAAATGAAACTTAG

Predicted protein sequences of Glyma02g33920

Limit To All Plant Sequences

>Glyma02g33920.1   sequence type=predicted peptide   gene model=Glyma02g33920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSGSQSEPFDVEIGDHLEDMIRGLGQESFRQAHAPMYDTLQTDSKKPLYPGYKNSLMLLSVMLSLVNVKARYGWSDKIFSSLLQVVHDLLPKENTLPKSYYQAKKILCPMGMEYQKIHACPNDCILYKHEFQEMPKCPRFKHLFANGDNAKDLAWHENGRNCDGMLHHPANSSQWKKIDRLFLDFGKEARNLRLGLASDGMNPYGSLSPRQSGNDINVYLSSLIEDLTKLWDEGVLLFDGFQNETFQMPTMLFCLPTGSTPEYYIWKDPKEAKNVIGTLINIQGKTKDGLNTRQDLVEMDIRSQFYPSKVLDPVKLDNLENEVAIILWYTKNLHCPEASIVERYITEEAIEFCSEYIEKAKPIGLPESRHDERVGGKGSRGLHVITPTVKDLLQAHLYVLNNSNEVLSYILRHEGLVKESNPKMSKNWVLKKHNKTFLDWFKDTIFADDNASETLRKLADGPKRNVITWQGYDINKYSFYRRAQDEKSTMQNSGVTLRAESQHFASVHDDNPCVASIPYFEFIEEIWELNYVKFNVCVFKCKWVDNNTKQAKQVFYVQDPCDERCLVVLHGKTIGVNVEDDDSYIDTYVSPLQMATPPSSPPLPPSTGAASQSPSTLKRTRNATRLRSLVTRPVRAERPLVHVDPATEKADEPPHQQGKCRRHCMPKVRHWQGEMGSILSEPQRPFVGGCAKKGTDTVIDPPSPIKRHGSLVAHGRQDVLTAAIGQPEHPGRVRAAGAGVTIKQYYGLAPRTSRTQMQSQFQSQMQSQGLTLPPEPEVGPSAARASTKESCVDPSGNDPDTGADTGCTSKKILPIYVEEVKDADAPIPVPTEEFKLVGQTLNTFLAWPTHLVKHLSEQGAVGPAKPADRPDHEVDDPLYLMTLTIPQLFLKPLQVMWDAIVFGVFNEDFPLYINHEDLSKIAHGGQCLNISVIQLWIFALKGLNDMSQPKSKVGARWIVVKCNRQKGSTECDYYVMHWMSTIILGSFKNNWEMYFNDARPLESERLKALHIQWAKYYLKVRNET*

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