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Report for Sequence Feature Glyma02g33893

Feature Type:gene_model
Chromosome:Gm02
Start:37819873
stop:37820976
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g33893
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26360AT Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555 SoyBaseE_val: 8.00E-54ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0044267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PTHR11353Panther CHAPERONIN JGI ISS
PTHR11353:SF24Panther CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, GAMMA SUBUNIT, TCPG JGI ISS
PF00118PFAM TCP-1/cpn60 chaperonin family JGI ISS
UniRef100_G7IPS8UniRef Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit gamma (Fragment) n=1 Tax=Medicago truncatula RepID=G7IPS8_MEDTR SoyBaseE_val: 4.00E-57ISS
UniRef100_I1LAC0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LAC0_SOYBN SoyBaseE_val: 2.00E-59ISS

Expression Patterns of Glyma02g33893
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g33893 not represented in the dataset
Glyma02g33893 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g33893 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g187800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g33893
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g33893
>Glyma02g33893.1   sequence type=CDS   gene model=Glyma02g33893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAATACATTGAGGAGCTCTGCATGCAGATATTGAAGTTTAAACCAGATTTGGTGATTACAGAGAAAGGACTTAGTGATTTCGCATGCCATTTTCTCAGCAACCATGGACTTAGTGCAATCAGAAGGCTGAGAAAAACTGATAATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCGGATGAATTACAGGAGTCTGATGTTGGTACTGGTGCTGGGTTATTTGAAGTTAAGAAGATTGGAGATGAGTTTTTTGCATTTATTGAGGGGTGCTAG
Predicted protein sequences of Glyma02g33893
>Glyma02g33893.1   sequence type=predicted peptide   gene model=Glyma02g33893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEYIEELCMQILKFKPDLVITEKGLSDFACHFLSNHGLSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIEGC*






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