Glyma02g33860 - SoyBase

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Report for Sequence Feature Glyma02g33860

Feature Type:	gene_model
Chromosome:	Gm02
Start:	37798210
stop:	37799152
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g33860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52360	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:19412343-19412695 FORWARD LENGTH=86	SoyBase	E_val: 8.00E-10	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JGC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGC0_SOYBN	SoyBase	E_val: 1.00E-86	ISS

Expression Patterns of Glyma02g33860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g33860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g187500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g33860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g33860

Limit To All Plant Sequences

>Glyma02g33860.1   sequence type=CDS   gene model=Glyma02g33860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTTCAATGAGACTTGGATACTTGATGACTGTATTTGCTATGTCAGGAAGCATCGTCCTTTTGTTTTATCAAGTCAATAAGCATTTGTGCAACAACTTCGTGAAGAAATTTGAGTTTGAAATTCGAGGCTCAATGAAACACCAAACAAAAAAGAAGGTGCAATTTGCAAAAGATGTGATGGAAATTCCAATGGAGGAGAAAAGTGATCGTATAAATGTAGCAAGGACTCAGCAGGTCATTGATAAGGTTTTGTTTATAGATGATGTTATGAAATCAAAACATGAACAGAAATTGAAAGATGCCATGCCTCCTAATAGGGCAATTCTATATAGAGGGATTATGAATGATAGGAAAGGGAGACTTGGTTTTTAA

Predicted protein sequences of Glyma02g33860

Limit To All Plant Sequences

>Glyma02g33860.1   sequence type=predicted peptide   gene model=Glyma02g33860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSMRLGYLMTVFAMSGSIVLLFYQVNKHLCNNFVKKFEFEIRGSMKHQTKKKVQFAKDVMEIPMEEKSDRINVARTQQVIDKVLFIDDVMKSKHEQKLKDAMPPNRAILYRGIMNDRKGRLGF*

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