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Report for Sequence Feature Glyma02g33770

Feature Type:gene_model
Chromosome:Gm02
Start:37573481
stop:37577335
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g33770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57290AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 3E | chr3:21196786-21199073 REVERSE LENGTH=441 SoyBaseE_val: 0ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006352GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005852GO-cc Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0008180GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signalosome SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2758 KOG Translation initiation factor 3, subunit e (eIF-3e) JGI ISS
PTHR10317Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 6-RELATED JGI ISS
PF01399PFAM PCI domain JGI ISS
PF09440PFAM eIF3 subunit 6 N terminal domain JGI ISS
UniRef100_I1JGB5UniRef Annotation by Michelle Graham. Best UniRef hit: Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Glycine max RepID=I1JGB5_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JGB5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Glycine max RepID=I1JGB5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g33770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g33770 not represented in the dataset
Glyma02g33770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g33770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g187100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g33770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g33770
>Glyma02g33770.2   sequence type=transcript   gene model=Glyma02g33770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCATTCTCTTTTCTTCTCTTCTACTCACATGCTCAAAATCCTAATCGATTTCCTTGCACACAAAACCCCACTTATAGTGTGCTTGAATTAGATTCATGGTGGAAGATAATCAATTTAATTTTTAATGGTGAAGAAAGAAGTAGAAATCGTATCTAACCCTAAGCGTGGGTGTTGTGAGTGGTAAGAAGAATGGCCGAGTACGACCTAACCCCGCGGATGGCGCCGAATCTGGACAGGCACCTTGTGTTCCCCCTCCTGGAGTTCCTGCAGGAGCGCCAGCTGTACGACGACAACCACATTCTGAAGGCGAAGATCGACCTCCTCAACAACACCAACATGGTCGACTACGCCATGGACATCCATAAAAGCCTATATCACACCGAGGAGGTACCCCACGACATGGTCGACCGCAGGGCCGAGGTAGTCGCCCGCCTCAAGTCCCTCGAGGAGGCTGCCGCCCCCCTCGTTGCGTTCCTCCAGAACGCTGCTGCCGTGCAGGAGCTCCGTGCCGACAAGCAGTACAATCTTCAGATGCTCAATGACCGATATCAGATTGGTCCTGCACAGATCGAAGCATTGTACCAATATTCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAATACAGAGCTTTGTGCACAAATAGTGAAAGGAGTTTGAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAGTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCCACAGCATTCATTGTTAACAAGAGGAGGAGGCCTCAATTCAAGGATTTTATTAAAGTTATTCAACAAGAGCAGCATTCATATACGGACCCTATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAATGTGAAGAAGTGATTCTCAATGATCCCTTCCTTGGCAAAAGAGTTGAAGAAAGCAACTTTTCAACTGTACCACTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAAACATACTGTAGAATACACCAACGGATTGACATGGGAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTTAATCTCATCCGTAGCTCAAAGCTTGATGCCAAAATTGACTCCGAAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGTACTTACAAGTTGGTCAGTCAACTTCTGGAACACGCACAAGCTCAAACTGCCCGGTAACTGTGTAGGTAGATCGATGAGAGTATTTGTTTTATCTTTCCTGATGCATCAAATTGTTTTTGGCTATGATGTTTATTTTGGATTTAGAATTACATTCAAATTTATGGGTTGTATACCGCATGGAGTAAGTTCTTCTGATGTTACTTGTATCCAAACAAGTAGTATTGATAAACCATTTTTTGAAGTAGGTTCTTCTGATGTTACTTGTGGATCCAAACAAGTAGTATTGATAACCATTTTGCTTAACATGTTTGCCATGAACTTCCTCACTGACCATTGCAGCTGCAGGCAT
Coding sequences of Glyma02g33770
>Glyma02g33770.1   sequence type=CDS   gene model=Glyma02g33770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGTACGACCTAACCCCGCGGATGGCGCCGAATCTGGACAGGCACCTTGTGTTCCCCCTCCTGGAGTTCCTGCAGGAGCGCCAGCTGTACGACGACAACCACATTCTGAAGGCGAAGATCGACCTCCTCAACAACACCAACATGGTCGACTACGCCATGGACATCCATAAAAGCCTATATCACACCGAGGAGGTACCCCACGACATGGTCGACCGCAGGGCCGAGGTAGTCGCCCGCCTCAAGTCCCTCGAGGAGGCTGCCGCCCCCCTCGTTGCGTTCCTCCAGAACGCTGCTGCCGTGCAGGAGCTCCGTGCCGACAAGCAGTACAATCTTCAGATGCTCAATGACCGATATCAGATTGGTCCTGCACAGATCGAAGCATTGTACCAATATTCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAATACAGAGCTTTGTGCACAAATAGTGAAAGGAGTTTGAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAGTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCCACAGCATTCATTGTTAACAAGAGGAGGAGGCCTCAATTCAAGGATTTTATTAAAGTTATTCAACAAGAGCAGCATTCATATACGGACCCTATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAATGTGAAGAAGTGATTCTCAATGATCCCTTCCTTGGCAAAAGAGTTGAAGAAAGCAACTTTTCAACTGTACCACTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAAACATACTGTAGAATACACCAACGGATTGACATGGGAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTTAATCTCATCCGTAGCTCAAAGCTTGATGCCAAAATTGACTCCGAAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGTACTTACAAGTTGGTCAGTCAACTTCTGGAACACGCACAAGCTCAAACTGCCCGGTAA

>Glyma02g33770.2   sequence type=CDS   gene model=Glyma02g33770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGTACGACCTAACCCCGCGGATGGCGCCGAATCTGGACAGGCACCTTGTGTTCCCCCTCCTGGAGTTCCTGCAGGAGCGCCAGCTGTACGACGACAACCACATTCTGAAGGCGAAGATCGACCTCCTCAACAACACCAACATGGTCGACTACGCCATGGACATCCATAAAAGCCTATATCACACCGAGGAGGTACCCCACGACATGGTCGACCGCAGGGCCGAGGTAGTCGCCCGCCTCAAGTCCCTCGAGGAGGCTGCCGCCCCCCTCGTTGCGTTCCTCCAGAACGCTGCTGCCGTGCAGGAGCTCCGTGCCGACAAGCAGTACAATCTTCAGATGCTCAATGACCGATATCAGATTGGTCCTGCACAGATCGAAGCATTGTACCAATATTCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAATACAGAGCTTTGTGCACAAATAGTGAAAGGAGTTTGAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAGTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCCACAGCATTCATTGTTAACAAGAGGAGGAGGCCTCAATTCAAGGATTTTATTAAAGTTATTCAACAAGAGCAGCATTCATATACGGACCCTATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAATGTGAAGAAGTGATTCTCAATGATCCCTTCCTTGGCAAAAGAGTTGAAGAAAGCAACTTTTCAACTGTACCACTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAAACATACTGTAGAATACACCAACGGATTGACATGGGAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTTAATCTCATCCGTAGCTCAAAGCTTGATGCCAAAATTGACTCCGAAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGTACTTACAAGTTGGTCAGTCAACTTCTGGAACACGCACAAGCTCAAACTGCCCGGTAA
Predicted protein sequences of Glyma02g33770
>Glyma02g33770.1   sequence type=predicted peptide   gene model=Glyma02g33770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYDDNHILKAKIDLLNNTNMVDYAMDIHKSLYHTEEVPHDMVDRRAEVVARLKSLEEAAAPLVAFLQNAAAVQELRADKQYNLQMLNDRYQIGPAQIEALYQYSKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYTDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSETGTVIMEPNHPNVYEQLIDHTKALNGRTYKLVSQLLEHAQAQTAR*

>Glyma02g33770.2   sequence type=predicted peptide   gene model=Glyma02g33770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYDDNHILKAKIDLLNNTNMVDYAMDIHKSLYHTEEVPHDMVDRRAEVVARLKSLEEAAAPLVAFLQNAAAVQELRADKQYNLQMLNDRYQIGPAQIEALYQYSKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYTDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSETGTVIMEPNHPNVYEQLIDHTKALNGRTYKLVSQLLEHAQAQTAR*






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