SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G41680 | AT | Annotation by Michelle Graham. TAIR10: NADPH-dependent thioredoxin reductase C | chr2:17376349-17379028 REVERSE LENGTH=529 | SoyBase | E_val: 0 | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0010581 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019430 | GO-bp | Annotation by Michelle Graham. GO Biological Process: removal of superoxide radicals | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thioredoxin-disulfide reductase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0404 | KOG | Thioredoxin reductase | JGI | ISS | |
| PTHR22912 | Panther | DISULFIDE OXIDOREDUCTASE | JGI | ISS | |
| PTHR22912:SF51 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00070 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| UniRef100_I1JGA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Thioredoxin reductase n=1 Tax=Glycine max RepID=I1JGA5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin reductase n=1 Tax=Glycine max RepID=I1JGA5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g33070 not represented in the dataset |
Glyma02g33070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g185300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g33070.1 sequence type=CDS gene model=Glyma02g33070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTACGAAGATAGGACTCGGAGTTGGTCCCGTCCCAACAACCACTCACCGAGTCACCGCCGTCGCCGCCCCTTCCTCCGCCGTATTCTCCCCGCCGCCGCACCGCCTCTTCCTCATCAACTCGCGCCGGCCGCCCCTCCGACCTCGCCCCTCCCCCCTCCCCCTCCGCGTCGCCTCCTCCTCCTCCTCTTCCTCCTCCGTCGCCGCGCCAGGAAAAGGAGTTGAAAATGTGGTAATTATAGGTTCAGGCCCTGCAGGATACACGGCAGCAATATATGCTGCACGTGCCAATTTGAAACCTGTGGTGTTTGAGGGGTACCAAGCTGGTGGTGTCCCTGGGGGGCAGTTGATGACTACAACTGAAGTGGAGAATTTTCCTGGATTTCCAGATGGCATAAGTGGACCTGATCTGATGGACAGGATGCGACGGCAAGCTGAACGTTGGGGTGCAGAATTGTATCAGGAAGATGTTGAAGCTATTGATGTGAAAAGTAGTCCTTTTACTGTCCAAAGTAGTGAACGTAAGGTTAAGAGCCATACTGTCATTTATGCTACTGGAGCTACTGCAAAACGACTTAGGCTACCCCGAGAAGATGAATTTTGGAGCCGAGGAATTAGTGCTTGTGCAATTTGTGATGGAGCATCACCTCTATTCAAGGGTCAAGTTCTTGCTGTTGTTGGAGGGGGGGATACAGCTACAGAAGAAGCATTATACTTAACAAAATATGCTCGCCATGTACATTTGCTTGTACGTCGGGACCATCTGAGGGCTTCCAAAGCTATGCAAGATAGAGTGTTTGACAATCCCAATGTCGCTGTGCACTTCAATACAGAGGCAGTGGACCTTGTAAGCAACACCAAAGGACAGATGTCTGGCATTTTAGTAAGAAAGATTGATACTGGGGAGGAATATGTGCTTGAGGCAAAAGGGCTGTTTTATGGCATAGGCCATTCGCCAAATACCGAACTGTTGAAAGGCCAAGTCGAATTAGACCACTCTGGCTATGTACAAGTTCAGGAGGGTACTGCAAAAACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTGCAGGACCATGAATGGAGGCAAGCTATAACTGCTGCTGGATCTGGATGCGTTGCAGCTTTATCAGTTGAGAGATATCTTGTGAGCAATGATCTTCTTATAGAGTTCCATCAGCCCAAAACTGAAGAGGTTAAGAAGGAACTAACAGACAGGGATGTACACGAGGGCTTTGACATTACACTTACAAAGCATAAGGGGCAGTATGCTCTTCGAAAATTGTATCATGACAGTCCAAGGCTTATATGCGTATTATATACATCACCAACATGTGGTCCCTGTAGGACTCTGAAGCCAATCCTTAGTAAGGTGATTGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGATATAGAGGAAGATCCAGAAATAGCAGAAGCAGCTGGAATAATGGGTACTCCATGTGTGCAGTATTTTAAAAACAAGGAGATGCTCAAGACTGTCTCAGGAGTCAAAATGAAGAGAGAATACAGAGAATTTATTGAAGCAAACAAATAG
>Glyma02g33070.1 sequence type=predicted peptide gene model=Glyma02g33070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTKIGLGVGPVPTTTHRVTAVAAPSSAVFSPPPHRLFLINSRRPPLRPRPSPLPLRVASSSSSSSSVAAPGKGVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGISGPDLMDRMRRQAERWGAELYQEDVEAIDVKSSPFTVQSSERKVKSHTVIYATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYARHVHLLVRRDHLRASKAMQDRVFDNPNVAVHFNTEAVDLVSNTKGQMSGILVRKIDTGEEYVLEAKGLFYGIGHSPNTELLKGQVELDHSGYVQVQEGTAKTSVEGVFAAGDVQDHEWRQAITAAGSGCVAALSVERYLVSNDLLIEFHQPKTEEVKKELTDRDVHEGFDITLTKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEFDQNVHFVEIDIEEDPEIAEAAGIMGTPCVQYFKNKEMLKTVSGVKMKREYREFIEANK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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