SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57390 | AT | Annotation by Michelle Graham. TAIR10: AGAMOUS-like 18 | chr3:21233910-21235735 FORWARD LENGTH=256 | SoyBase | E_val: 4.00E-66 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0048577 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of short-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| PF01486 | PFAM | K-box region | JGI | ISS | |
| UniRef100_E6NU98 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL06B08.10 protein n=1 Tax=Jatropha curcas RepID=E6NU98_9ROSI | SoyBase | E_val: 2.00E-93 | ISS |
| UniRef100_I1JGA3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGA3_SOYBN | SoyBase | E_val: 2.00E-172 | ISS |
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Glyma02g33040 not represented in the dataset |
Glyma02g33040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g185500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g33040.1 sequence type=CDS gene model=Glyma02g33040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGAGGGAAGATTGAGATTAAGAAGATTGAGAATTTGAACAGCAGACAAGTTACCTTCTCCAAGAGGAGAAATGGGTTGTTGAAGAAGGCCAAAGAGTTGTCTGTTCTCTGTGATGCAGAGGTTGCTGTCATCATATTCTCCAGCACTGGCAAGCTTTATGAGTTCTCAAACACAAGCATGGAGCATACCCTTTCGAGGTACAGTAAAGGCGCAGAATCAGATTCTGCAGAGCAACCTATTGATGTGCCCCCAACAGATGTTATGGCTGTGGAGCCTGATACTAACCTTTTGATGGAGGAAATAACAAAGCTTCGATCAGCATACTTAAGGATGATGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTGCAACAACTAGAAAATCAACTAAGTGAAGGGATGCAATCTGTCAAAGACAAGAAGGAACAAGTACTTGTGGAACAGCTTAGGAAGTCCAGGATACAGGAGCAAAAGGCCATGCTGGAAAATGAAGTTCTGCGCAAACAGCTTGAGGAAATACAAAATAAAACAAAGTCACAGTTCCTTGAATTCAGCTCTTTGGATAGGACATTTTCCAAGAATGGTTCAAAATCCCTTTTCAATTGTGCTTCAGAGGAAAATGACCTTTCAGATACTTCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCCAGAGGAAAGCATTGAAGATGGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACATTGA
>Glyma02g33040.1 sequence type=predicted peptide gene model=Glyma02g33040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGAESDSAEQPIDVPPTDVMAVEPDTNLLMEEITKLRSAYLRMMGKELDGLSLKELQQLENQLSEGMQSVKDKKEQVLVEQLRKSRIQEQKAMLENEVLRKQLEEIQNKTKSQFLEFSSLDRTFSKNGSKSLFNCASEENDLSDTSLQLGLSTDYGRQRKALKMEPCNDSGSQVASH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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