SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G56580 | AT | Annotation by Michelle Graham. TAIR10: MAP kinase kinase 6 | chr5:22904851-22906620 REVERSE LENGTH=356 | SoyBase | E_val: 0 | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0045727 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of translation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004708 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0581 | KOG | Mitogen-activated protein kinase kinase (MAP2K) | JGI | ISS | |
| PTHR24360 | Panther | MAPKK/MEKK | JGI | ISS | |
| PTHR24360:SF39 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G8AA64 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase 6 n=1 Tax=Gossypium hirsutum RepID=G8AA64_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGA1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGA1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g32980 not represented in the dataset |
Glyma02g32980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g186300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g32980.1 sequence type=CDS gene model=Glyma02g32980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGACAAAGATGCCATTGAAGCAGCTGAAGCTCGCGGTTCCTGCTCAGGAAACCCCCATCACATCTTTCCTGACTGCAAGCGGAACATTCCATGATGGAGATCTACTCTTGAATCAGAAAGGGTTGCGTCTTATCTCTGAAGAAAAAGAATCACGGCCTTCAGATGGTAAGGAACTGGAATTTGACTTCTCGCTGGATGACCTTGAGACCATCAAAGTAATTGGAAAAGGCAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAGATTGTTTGCTTTAAAGGTTATTCAGATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAAGCGTCACAGTGTCCACATGTTGTAGTTTGCTATCACTCATTCTATCATAACGGAGTAATATCTCTTGTGCTAGAATACATGGATCGTGGTTCTCTAGCAGATGTAATCAAACAAGTTAAAACTATTCTGGAACCATATCTTGCTGTGGTTTCTAAGCAGGTATTGCAAGGCCTCGTTTACCTGCACAATGAAAGGCATGTAATACATAGGGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGCGCCATGCTAGCAAGCTCAATGGGCCAAAGGGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGTGACATCTGGAGTTTGGGTATGGTAGTGCTTGAGTGTGCCATAGGACGGTTTCCTTATATACAGTCCGAAGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGAAAGCCCCCCACCTTCTGCTCCACCCGATCAGTTCTCCCCGGAGTTCTGTTCATTTGTGTCATCCTGCATACAAAAGGATCCTCGGGATAGATTAACATCATTGAAGCTTCTGGATCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGGCAGGTAGCTTGGAACCTCCTGTAAACTTTCCGAGATAA
>Glyma02g32980.1 sequence type=predicted peptide gene model=Glyma02g32980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTKMPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELEFDFSLDDLETIKVIGKGSGGVVQLVRHKWVGRLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLAVVSKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLAAIVESPPPSAPPDQFSPEFCSFVSSCIQKDPRDRLTSLKLLDHPFIKKFEDKDLDLGILAGSLEPPVNFPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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