Glyma02g32370 - SoyBase

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Report for Sequence Feature Glyma02g32370

Feature Type:	gene_model
Chromosome:	Gm02
Start:	35643981
stop:	35648289
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g32370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10330	AT	Annotation by Michelle Graham. TAIR10: Cyclin-like family protein \| chr3:3199907-3201642 FORWARD LENGTH=312	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1597	KOG	Transcription initiation factor TFIIB	JGI		ISS
PTHR11618	Panther	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	JGI		ISS
PTHR11618:SF13	Panther	BRF GENE PRODUCT	JGI		ISS
PF00382	PFAM	Transcription factor TFIIB repeat	JGI		ISS
PF08271	PFAM	TFIIB zinc-binding	JGI		ISS
UniRef100_I1JG98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG98_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P48513	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor IIB n=1 Tax=Glycine max RepID=TF2B_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g32370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g32370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g185900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g32370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g32370

Limit To All Plant Sequences

>Glyma02g32370.1   sequence type=CDS   gene model=Glyma02g32370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACGCGTTCTGCAGCGACTGCAAGAGGCAGACGGAGGTGGTGTTTGACCACTCTGCCGGCGACACGGTGTGCTCGGAGTGCGGCCTCGTACTGGAGTCCCACTCTATCGACGAGACCTCTGAGTGGCGTACCTTCGCCAACGAGTCCGGTGACAACGATCCCAATCGTGTCGGCGGGCCCTCCAACCCCCTCCTCACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGGCGGAGGTGGCGGCGAGTTCCTCTCCTCCTCCCTCGGTCGCTGGCAGAACCGCGGCTCCAACCCTGATCGCGCCCTCATCATCGCCTTCAAGACCATCGCCACCATGTCCGACAGGTTGGGACTCGTTGCGACCATCAAGGATCGGGCAAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGTCTCTACATCGCTTGCCGACAAGAAGACAAACCTCGTACTGTAAAGGAAATTTGCTCTGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCTAAAGAATACATAGTAAAACAACTGGGTTTGGAGAACGGTAATGCTGTGGAGATGGGTACAATACATGCAGGGGACTTCATGAGGCGATTCTGTTCTAATCTTTGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCATAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATTTCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAGAAACCTCTCAAAGATATATCACTTGCCACAGGCGTTGCAGAAGGAACGATTAGGAACTCCTACAAGGATCTTTATCCCCATGTTTCCAAAATAATACCAAATTGGTATGCTAAGGAGGAGGATTTAAAGAATCTTTGCAGCCCTTGA

Predicted protein sequences of Glyma02g32370

Limit To All Plant Sequences

>Glyma02g32370.1   sequence type=predicted peptide   gene model=Glyma02g32370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVHKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP*

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