Glyma02g31480 - SoyBase

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Report for Sequence Feature Glyma02g31480

Feature Type:	gene_model
Chromosome:	Gm02
Start:	34458041
stop:	34466283
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g31480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13650	AT	Annotation by Michelle Graham. TAIR10: elongation factor family protein \| chr5:4397821-4402364 FORWARD LENGTH=675	SoyBase	E_val: 0	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0031425	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0462	KOG	Elongation factor-type GTP-binding protein	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF14	Panther	GTP-BINDING PROTEIN TYPA/BIPA	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF00679	PFAM	Elongation factor G C-terminus	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_I1JG82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG82_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6SYB1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein TypA n=1 Tax=Trifolium pratense RepID=Q6SYB1_TRIPR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g31480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g31480

Paralog	Evidence	Comments
Glyma10g17570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g31480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g182800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g31480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g31480

Limit To All Plant Sequences

>Glyma02g31480.1   sequence type=CDS   gene model=Glyma02g31480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGATGGCAGCACTCACTACTAATATTATCCACACCCCTCTCTTACCCAACAATACCACTCTTCCAAAGACTTCATCTTTTCAACCCTTCTTCTCTAACCAACTACTTGGCCTCCCCTTATCTTCTTCTTCTTCTTTAACCGTCGCTAAACGGTTCTCTTGCAGGCCCATCAAGTGTTCTGTTTCTGAAGCCACAGAGCCCAAAACAGAGAAGAAGAGGCAATTGCTGAGAAGAGGGGACGTGAGAAACATAGCCATTGTTGCTCACGTTGACCATGGGAAAACCACTCTCGTTGATGCCATGCTCAAACAAACTAAGGTATTTCGTGATAATCAATTTGTTCAGGAAAGGATAATGGACTCGAATGATTTGGAGCGCGAAAGAGGAATTACAATACTGAGTAAAAATACATCTGTTACTTATAAAGATGCGAAGATTAATATAATAGATACTCCGGGTCACTCTGATTTTGGTGGTGAAGTGGAGCGCATCTTAAATATGGTGGAAGGGATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTAGAGTTTGGTCACTCAGTTGTCGTGGTTGTGAATAAAATAGATAGGCCTTCTGCTCGCCCAGAATATGTCGTCAACTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCATGCAGGGTTGACTCCTGAAAATCTGGCAGAAGACCTTGGCCCATTGTTTGAATCCATCATTAGATGCATCCCTGGACCACATATTGACAAAGATGGTGCCCTTCAAATGCTTGTTACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGCGTGCAAGCTGGAGTCTTAGAAAAAGGCATGGATGTCCGAGTATGTACTTCAGATGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTATGTGTATGACAAATTCAATAGGGTCCCTGCAGATAAGGTGGAGGCAGGTGATATATGTGCAGTTTGTGGAATTACTGATATTCAGATTGGGGAGACTATTGCTGATAAAGTATCTGGGAAGCCACTACCTTCCATCAAGGTGGAAGAACCGACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGGAATCTGGCTATGAAAGTCGAAGATGGTGAAACAGCTGATACATTTGTTGTCAGTGGGCGAGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGAACAACTGTTGGAGCCGTATGAGATTGCTACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTCGGCAAGAGACGAGGACAGATGTTTGATATGCAAGGAGTTGGATCGGAAGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGTTTGCGGAACTCAATTTTAACTGCCTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATAGCTATGGGCCATGGGCTGGTGACATTAGTACTCGGGATCAAGGCTCATTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCAATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTATAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCCTTGAATGTTTGCAAGAAGAAAGCTGCAACCAACGTACGTTCCAACAAGGAACAAACAGTGATTCTTGATACGCCATTGGACTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCGCAAGTATCCGAATGTGCAAGAATCCAAAAATTACAAACAAGAAAACAAGGTAG

Predicted protein sequences of Glyma02g31480

Limit To All Plant Sequences

>Glyma02g31480.1   sequence type=predicted peptide   gene model=Glyma02g31480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKMAALTTNIIHTPLLPNNTTLPKTSSFQPFFSNQLLGLPLSSSSSLTVAKRFSCRPIKCSVSEATEPKTEKKRQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPEYVVNSTFELFIELNATDEQCDFQVIYASGIKGHAGLTPENLAEDLGPLFESIIRCIPGPHIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLEKGMDVRVCTSDDSCRYGRVSELYVYDKFNRVPADKVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNEQLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGPWAGDISTRDQGSLVAFEDGTSTSYAISSSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNVRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPASIRMCKNPKITNKKTR*

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