SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20898 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7323796-7324203 FORWARD LENGTH=108 | SoyBase | E_val: 6.00E-14 | ISS |
| UniRef100_I1JG77 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG77_SOYBN | SoyBase | E_val: 5.00E-82 | ISS |
|
Glyma02g31420 not represented in the dataset |
Glyma02g31420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g182300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g31420.1 sequence type=CDS gene model=Glyma02g31420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCAGTTTCTACAAGAACTCGAATGAAGTGCAAGAAACTTGAGGGAAAAAAGCAGCAGAAGAAAAAATCATCAATGGTTTATGACGCTACTACACCTACTTCTTCAGCCACCAAAGAAATAAAGGGTGAGGATCTTAATGAGGAAGATATATGTTCAAGTGTCTGTTCTACACCAAAGGGTAAAAGGTTCAGAATACCAGAAGTGCTAACATGTCCACCAGCTCCTAAGAAGAGAAGAGTAACATCATGCTCATCATCCAAGAACAAGAGATCCCCGATAGCATTTTTTGCTTCACCAGATATAGAGCTCTTTTTCTTTTCTGCAATTAAAAGTAGTGTACCTGCTTCAAGTTTTACCCCAAGTGGAGTTTGA
>Glyma02g31420.1 sequence type=predicted peptide gene model=Glyma02g31420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPVSTRTRMKCKKLEGKKQQKKKSSMVYDATTPTSSATKEIKGEDLNEEDICSSVCSTPKGKRFRIPEVLTCPPAPKKRRVTSCSSSKNKRSPIAFFASPDIELFFFSAIKSSVPASSFTPSGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
