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Report for Sequence Feature Glyma02g31295

Feature Type:gene_model
Chromosome:Gm02
Start:34032288
stop:34046647
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g31295
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57660AT Annotation by Michelle Graham. TAIR10: nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670 SoyBaseE_val: 0ISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003899GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR19376Panther DNA-DIRECTED RNA POLYMERASE JGI ISS
PTHR19376:SF11Panther DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT JGI ISS
PF00623PFAM RNA polymerase Rpb1, domain 2 JGI ISS
PF04983PFAM RNA polymerase Rpb1, domain 3 JGI ISS
PF04998PFAM RNA polymerase Rpb1, domain 5 JGI ISS
PF05000PFAM RNA polymerase Rpb1, domain 4 JGI ISS
UniRef100_I1L9X1UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Glycine max RepID=I1L9X1_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0002336DF5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336DF5 related cluster n=1 Tax=unknown RepID=UPI0002336DF5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g31295
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g31295 not represented in the dataset
Glyma02g31295 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g31295 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g181200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g31295
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g31295
>Glyma02g31295.1   sequence type=CDS   gene model=Glyma02g31295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGAAAGATGGTTTATTTTGCATGTCGCTCTGTCATATCACCAGATCCTTATTTAGCAGTCAATGAAATTGGGATTCCCCCATATTTTGCTTTAAGATTATCAGTGACTCCTTGGAATGTAGTGAAGTTAAGGAATGCTATCCTTAATGGTGCTGAATCCCATCCCAGTGCTTCTCATTATGCTGATAAAGTATCAATAGTCAAGCTTCCACCAAAAGGGAAGGAGATATCTGACCATGAGTTTGAAGGGAAAGTTGTTTATCGCCACTTGAAGGATGGCGATGTTGTGCTTGCCAATCGACAGGGGGAGAAAACTGTACGCATGCACTATGCAAACTGTAGGGTTACTACAGTTAATAACTTCTTTGTTTTATTTTTTCCCCTTCGTGATCTCTGTACTTATAATGCTGATTTTGATGGTGATGAGATTAATGTTCATTTTCCACAAGATGAAATTTCTCGGGCTGAAGCTTACAATATTGTAAATGCTAACAATCAATATGTGAAACCTACAAGTGGGGATCCAATCAGAGCTTTGATTCAGGATCATATTGTAAGTGCTGCTCTTCTTACAAAAAAGGATACTTTTCTAAGCTATGAAGAGTTCAATCAACTACTGTACAGTTCTGGTGTATCCATGGCTGGGCTAGGCTCATTCTATGGCAAACATGGGCAGAAAGTTTTCATGTCAAATTCTGAGAAAGCCTTTTCATTTGGTTATTTTCCCTCTCTTATATTAGTTAATAACAATTTATTAAACTATTTAGTTATCAGTGCATTGCTATACTATATCACCAGAGGTTCACCATCATTTACTGTTGAGAAGAATGCAAAAATCCCATCTAATTTTTTCAAGACTCGGATCAGGAAGGGGAAAAGATACACTCAAGATACATCAAAAAAGAAGGAAAAGCCTGATGAGGATAAATTATTGATATATAAAAATGACTTGGTGCTGCAAGAACTTTATGGATCAAATGTTGCTGGCAACCTACTTTCCGCATTAAGTCGGTTATTCACTACCTTTTTACAGATGCATGGGTTCACATGTGGAGTAGATGATCTTATGTTAACAGAAGGAAAGGATGTTGAAAGAATGAATCAGCTTAATAGTTGTGAGATAATTGGTAACAGTGTTCATCGTGAATTCATTAGAGTGAAGAATAGTGACAATATAGATTCAGTCACATTGCAATTGAATATTGAGAAAAAAATACGCAGTAATGGAGAAGCAACCTTAACATCAGATAGGAAGATGACAAACAAGCTTAACTCAACAACAAGCTCAGGTATATTAAAGGAGCTACTATCTGAAGGAATATTGCAACCTTCAGGAAAAAATTGTATTTCTCTTATGACTACATCTGGAGCTAAGGGTAGTATGGTAAATTTCCAGCAGATATCTTCTCATCTAGGCCAGCAAGAGTTGGAAGGAAAACGAGTCCCACGCATGGTTTCTGGAAAGACCTTACCCTGCTTTCCTCCCTGGGATTGTTCCCCTAGAGCAGGAGGGTTCATTATTGATCGGTTTCTTACTGCCCTTCACCCTCAGGAATACTACTTTTATTTCGTAAGATTGATAGAGCATAAGTATGTCTCATGTCTCACTCAACCAGGTGAACCAGTTGGTGTATTAGCTTCTCAATCTGTTGGAGAACCGGCAACGCAGATGACAGAGAGAGGGGAGGAATCAAGTTACTCCAAGAGTAACTCTAAAATGAGTTTTCTTTTAATTGTTTTAACGAAAATCCTGATGGCTGCTGCACGTGATATCAAAACTCCATTTATGACATGCCCCTTGAGACATGAGAAATCTATAAATTTGAAGAAGATCACTGTAGCTGACATAATTAAGAGTATGAAAGTTTCTGTTGTACCAGTAACTGTTCTTGGTGGTCAGATTTGCAGTATATATAAACTTGTAATGAAGCTATATAAATCTAAACAGTATCCAGAATATACTGATATTACCCTTGAAGACTGGGAGGAAACTCTAAGGGTTAACTTTACAGATCCACAATCAAATTATTCAAACAGCTCTGAAGATGCTCACGACAATGGATCAGAATCTGAGAAAAAAGGTCAAAGTAATGATGAAGATGATGATGGTGTTGTTGTTGAAGACACTGAAGGGAATGAAGATCTTGGATCAGATGCACAAAAGAGAAAACTACAAGGTACTGATGAGGTTGATTATGAGGATGGTCCTGAAGAGGAAACACATGATGGTGAGCTATATGACTGGGCAATTTTTGTGGAAGCTAAAGGGATGCATTTTGAGATCCACTTTAGATTTACTGGTGAACCTCACATTTTGTTAACTCAGATTGTTCAGAGAACAGCCAAGAAGTTTTGCCTCCAAAATTTTGGAAAGGTTGGTGAATGTAAAGCTATTACATGTAAAGAAAGTGGAGTAATCTACTATGGTAAAGATGACAGAAAAGGGGATGAGATTTCAGCCTTTGAGAAAGAAGAAATACCAGCACTTCAGACATCAGGGGTACATTTTAAAACATTTTGGGAGTTGGAAGATGATCTGGATGTGAGGTACATTTATTCAAACAACGTGCTTGCTATGCTAAATGCTTATGGGGTGGAAGCAGCCAGGGAGACCATCATCAGGGAAGTACAGAATCTCAATGCCGACTTTATGACACACTCTGGTGGCTACTGCCTGATGAACAGAACGGGGAGCATAGCAGACTCAACATCCCTTTTCATCAAAATGTGCTTTGAGACAGCTGCCAAATTTATTGTTGAAGCAGCTTATCATGGGCAAGTGGACAATTTGGAGACACCATCTGCTAGAATTTGTATTGGTTTGCCAGTGAAGATGGGAACTGGGTGCCATGACTTGATACAGAAGCTGGAGATATGA
Predicted protein sequences of Glyma02g31295
>Glyma02g31295.1   sequence type=predicted peptide   gene model=Glyma02g31295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGKMVYFACRSVISPDPYLAVNEIGIPPYFALRLSVTPWNVVKLRNAILNGAESHPSASHYADKVSIVKLPPKGKEISDHEFEGKVVYRHLKDGDVVLANRQGEKTVRMHYANCRVTTVNNFFVLFFPLRDLCTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFMSNSEKAFSFGYFPSLILVNNNLLNYLVISALLYYITRGSPSFTVEKNAKIPSNFFKTRIRKGKRYTQDTSKKKEKPDEDKLLIYKNDLVLQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLNSCEIIGNSVHREFIRVKNSDNIDSVTLQLNIEKKIRSNGEATLTSDRKMTNKLNSTTSSGILKELLSEGILQPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFYFVRLIEHKYVSCLTQPGEPVGVLASQSVGEPATQMTERGEESSYSKSNSKMSFLLIVLTKILMAAARDIKTPFMTCPLRHEKSINLKKITVADIIKSMKVSVVPVTVLGGQICSIYKLVMKLYKSKQYPEYTDITLEDWEETLRVNFTDPQSNYSNSSEDAHDNGSESEKKGQSNDEDDDGVVVEDTEGNEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELYDWAIFVEAKGMHFEIHFRFTGEPHILLTQIVQRTAKKFCLQNFGKVGECKAITCKESGVIYYGKDDRKGDEISAFEKEEIPALQTSGVHFKTFWELEDDLDVRYIYSNNVLAMLNAYGVEAARETIIREVQNLNADFMTHSGGYCLMNRTGSIADSTSLFIKMCFETAAKFIVEAAYHGQVDNLETPSARICIGLPVKMGTGCHDLIQKLEI*






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