SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57670 | AT | Annotation by Michelle Graham. TAIR10: C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383 | SoyBase | E_val: 2.00E-144 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0010500 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmitting tissue development | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10593 | Panther | SERINE/THREONINE-PROTEIN KINASE RIO | JGI | ISS | |
| UniRef100_B9SL66 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 1 protein, putative n=1 Tax=Ricinus communis RepID=B9SL66_RICCO | SoyBase | E_val: 1.00E-162 | ISS |
| UniRef100_I1JG69 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG69_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g31270 not represented in the dataset |
Glyma02g31270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g181100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g31270.1 sequence type=CDS gene model=Glyma02g31270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGACCCTTACTCCAATTTCTTCTCACCAGGTAGTTTCTTCCACCACTATCCTTCTCCAAACCCTTCACCCCACCACCATCCCTATGCTCACAACTTCCTCAACCAAAATGGTTCCAACATCAATAACCACAACACCTTTTTCCACTTCCACCACTTTCAAACCACTATTTGTTCTTCTTCACCTCCTTCCCCTCCCTTGAGAGAAGCCCTTCCTCTTCTAACTCTCAGCCCAAGAAATGAAGAGGAACAAGAAGAGGATGACCAAGATCAAGATCAGGAGATTCTTCAGGAAAATATTTGCACTGCCATGGATGTGGAAGAGAATTACAACAACAGAACCCTTCACCTTCACCCAAAAGGGGAGGAACAAGATCAAGAAGATACTGATGAAAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTTCTTTCTTCAGCAGCTTGTTCTACAGACAAAGAACAACAAGGAGGACATGGAGTTGGTAATAACAACAGTAATAATGGGAGTGAGGATTTTTCTTCTTCAGGGTTCTTGTCTAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCCGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTAAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGACTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCTGTGAGGGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGATCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTACGGGATTGATGGATTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGATAATGACTGA
>Glyma02g31270.1 sequence type=predicted peptide gene model=Glyma02g31270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADPYSNFFSPGSFFHHYPSPNPSPHHHPYAHNFLNQNGSNINNHNTFFHFHHFQTTICSSSPPSPPLREALPLLTLSPRNEEEQEEDDQDQDQEILQENICTAMDVEENYNNRTLHLHPKGEEQDQEDTDESVTVALHIGLPSPSAAEIASVLSSAACSTDKEQQGGHGVGNNNSNNGSEDFSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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