SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g31156

Feature Type:gene_model
Chromosome:Gm02
Start:33796241
stop:33805614
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g31156
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57680AT Annotation by Michelle Graham. TAIR10: Peptidase S41 family protein | chr3:21381054-21383629 FORWARD LENGTH=519 SoyBaseE_val: 7.00E-123ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008236GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity SoyBaseN/AISS
PTHR22939Panther SERINE PROTEASE FAMILY S1C HTRA-RELATED JGI ISS
PTHR22939:SF50Panther SUBFAMILY NOT NAMED JGI ISS
PF03572PFAM Peptidase family S41 JGI ISS
UniRef100_D7LVV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidase S41 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LVV5_ARALL SoyBaseE_val: 4.00E-121ISS
UniRef100_UPI0002336DEFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336DEF related cluster n=1 Tax=unknown RepID=UPI0002336DEF SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g31156
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g31156 not represented in the dataset
Glyma02g31156 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g31156
ParalogEvidenceComments
Glyma10g12410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g31156 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma02g31156
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g31156
>Glyma02g31156.1   sequence type=CDS   gene model=Glyma02g31156   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTTGTCGATCCTAAATTTAATCATCAAGATTGGGATCTGAAGTTGCAGCAAACCATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAACATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGGTTTAGAATTGGAAGTGATGGGAACGTACAAGGAGTGGGCCTGTTCATAAATGTTGAACCAAGAACAGGACATTTAACCTATTTAGATCTACCTTTCTGTAGTTTATCATTGGCTTTGTTGATGGTTAATTTCTGTCGAAGAACCTGCCTGGTCTCCTTTGGTGGGATTCTCCCTTTTCAACTACGATTTTTTCTATCCACAAGACTCCAACTTGAGACTATGCTTAAGGAGACCAAAGCCAGTGAGAGGCTTGATGGCATTGATAGTGAAACTGCTGCACAAAGGCTTCGGGGGAATGCTGGAACAACTGTTACAGTAAAGGTTCGTTGTCAAAGACTCGGGAACAAGCTCTTGGATCCGAGAGGTAATCTTGACATTTTAGTGATTATCATTCTTGAAATTGTCATTATCCCTCGTAGATCCCCAGATGGTCATCTCACAAAAACAGGCTATGTGAAATTGTCGGCCTTCCCTCAGACGGCTGCTGAAGACTTGAGGAACGCCATTCAGGAATTGGAAAATCAAGGATTCCCTTTTCTTGTAATTTTGTTGCATGGTGGTTTGGTAAAAGTTGGCCTTGATGTTACACAAATGTGGTTATATGGGAATAAGACTCTAGTGAACACAATTGATAAAGATGGGAACATGTTACCCATTAATATGGTTGATGGACATGCTATAACACATGATCCACTTGTGGTGATTGTGATCAATGAGGGAGGTGCAAGTGCCAGTGAGATTTTAGCTGGGGCATTACATGATAACGGTCTAGCTATTCTTGTGGGGCACAAAACATTTGGTAAAGGAAAGATTCAGTGCACAACAACAATGCTCAATTCAGCTAAGGAGATTTCAAGTTTAACCAAAGACAAGGCCTTAGTCTCTTCTCTGGAAGCAGATTCATGCATAATGGTAGCAGAACATGAGTTGGATTTGCAGGAGTCTAAGAGGATCATGTTAGCAAGTTAA
Predicted protein sequences of Glyma02g31156
>Glyma02g31156.1   sequence type=predicted peptide   gene model=Glyma02g31156   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TFVDPKFNHQDWDLKLQQTMVEMFPLNSADATYTKLRGMLSTLGDPFTRIISPKEYQGFRIGSDGNVQGVGLFINVEPRTGHLTYLDLPFCSLSLALLMVNFCRRTCLVSFGGILPFQLRFFLSTRLQLETMLKETKASERLDGIDSETAAQRLRGNAGTTVTVKVRCQRLGNKLLDPRGNLDILVIIILEIVIIPRRSPDGHLTKTGYVKLSAFPQTAAEDLRNAIQELENQGFPFLVILLHGGLVKVGLDVTQMWLYGNKTLVNTIDKDGNMLPINMVDGHAITHDPLVVIVINEGGASASEILAGALHDNGLAILVGHKTFGKGKIQCTTTMLNSAKEISSLTKDKALVSSLEADSCIMVAEHELDLQESKRIMLAS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo