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Report for Sequence Feature Glyma02g30714

Feature Type:gene_model
Chromosome:Gm02
Start:32791603
stop:32793999
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g30714
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06800AT Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375 SoyBaseE_val: 2.00E-35ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_Q01MN4UniRef Annotation by Michelle Graham. Most informative UniRef hit: H1005F08.10 protein n=2 Tax=Oryza sativa RepID=Q01MN4_ORYSA SoyBaseE_val: 1.00E-34ISS
UniRef100_UPI0002336CD6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336CD6 related cluster n=1 Tax=unknown RepID=UPI0002336CD6 SoyBaseE_val: 9.00E-159ISS

Expression Patterns of Glyma02g30714
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g30714 not represented in the dataset
Glyma02g30714 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g30714 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g177800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g30714
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g30714
>Glyma02g30714.2   sequence type=transcript   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGTGCTAGTTAGACAAATCAACGTATGTATCATTTTTCGCAGGTATCAAACGGAGCACACAGCAGTGAAGCCGACGTTGGAGGCTCAGAAAAAGACAGCTTCAACTTCCAACGACATGTGTTCGATGTTCCTTTTTCGTGTTTGAAGTTCTATTCACAAAATTTGCTGTGCCAATCTTCTCGGGACGACTCTGCTCCAATGTTCGGAAGTGTTGTTGATTCTTTCTTGTCTAGTGATGAAGACACGTTTTGTGAAACGTATAGAGAATATAGTGAACTTCCTTGCCATGACGTGTCACTTTATGAGCATTTCAGACACGAAGAGAAAAGATTGGAGGGTGATGATTCTGCCCCAGTTATTGAGGCTGAAGTTGTTTGTGCCACTTCTGGAAACTCTGCTTCTAGCATGGTACCAACTAGGAAAAATAGAATAAAATGGACCAAAGATTTGCATGAGCAATTTGTTGCAGCTGTCAACAGCCTTGGTGGTCCTCAAAAAGCAAAACCCAAGGCAGTGCTACAGATGATGAATTCAAAGTCGCTCACCATTTTTCATGTTAAAAGTCACTTGCAGAAATATCGGACCACAATGTACATGCAGAACTCTAGCAAGGAGGGATACAAAGAAAGCAAAGGCATAGACATGGTCACTGAACTTCAACAGAAAATAATTATACTTCTGGCAGCTATATGCAAATTGAGGAATCAAGACTACTGCAACTTGAGATTGGGAGAGGTATTCAAGAACAATTGGAGGCTCAACGAAATTTGCAAATGCTAGTCGAAGAACAAAAGAAACAGGTCAATAGTGTTTGTGGCAAAAATCAAATAAAGCAAATTGGAGGATCCAAATCTTAGGAGAATGACGGCAAAATATTTCTGGAAAAATAAATGGGCACGGTCCGCACGGACCTGTAATATTATTTACT

>Glyma02g30714.3   sequence type=transcript   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTCCACATTAAGTAGAATAAATTATTTGATTTGATACTTACTCTTGAGGCTCCCTCAGCTTATAGATTAGTCTTTTGGTTAAATTCTCCTCTTGTGCTTATGTGCTTAAATCCTAACAATTGATGTTCTCCTTGTGAGATATAATAGTATTACATTATTGAATCTACGCAGTTGCATGGTATTTATCTTCAGATAGTTGCAAAATTAACCCAATATAAAAGGTATCAAACGGAGCACACAGCAGTGAAGCCGACGTTGGAGGCTCAGAAAAAGACAGCTTCAACTTCCAACGACATGTGTTCGATGTTCCTTTTTCGTGTTTGAAGTTCTATTCACAAAATTTGCTGTGCCAATCTTCTCGGGACGACTCTGCTCCAATGTTCGGAAGTGTTGTTGATTCTTTCTTGTCTAGTGATGAAGACACGTTTTGTGAAACGTATAGAGAATATAGTGAACTTCCTTGCCATGACGTGTCACTTTATGAGCATTTCAGACACGAAGAGAAAAGATTGGAGGGTGATGATTCTGCCCCAGTTATTGAGGCTGAAGTTGTTTGTGCCACTTCTGGAAACTCTGCTTCTAGCATGGTACCAACTAGGAAAAATAGAATAAAATGGACCAAAGATTTGCATGAGCAATTTGTTGCAGCTGTCAACAGCCTTGGTGGTCCTCAAAAAGCAAAACCCAAGGCAGTGCTACAGATGATGAATTCAAAGTCGCTCACCATTTTTCATGTTAAAAGTCACTTGCAGAAATATCGGACCACAATGTACATGCAGAACTCTAGCAAGGAGGGATACAAAGAAAGCAAAGGCATAGACATGGTCACTGAACTTCAACAGAAAATCTATATGCAAATTGAGGAATCAAGACTACTGCAACTTGAGATTGGGAGAGGTATTCAAGAACAATTGGAGGCTCAACGAAATTTGCAAATGCTAGTCGAAGAACAAAAGAAACAGGTCAATAGTGTTTGTGGCAAAAATCAAATAAAGCAAATTGGAGGATCCAAATCTTAGGAGAATGACGGCAAAATATTTCTGGAAAAATAAATGGGCACGGTCCGCACGGACCTGTAATATTATTTACT
Coding sequences of Glyma02g30714
>Glyma02g30714.1   sequence type=CDS   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCATTTTTCGCAGGTATCAAACGGAGCACACAGCAGTGAAGCCGACGTTGGAGGCTCAGAAAAAGACAGCTTCAACTTCCAACGACATGTGTTCGATGTTCCTTTTTCGTGTTTGAAGTTCTATTCACAAAATTTGCTGTGCCAATCTTCTCGGGACGACTCTGCTCCAATGTTCGGAAGTGTTGTTGATTCTTTCTTGTCTAGTGATGAAGACACGTTTTGTGAAACGTATAGAGAATATAGTGAACTTCCTTGCCATGACGTGTCACTTTATGAGCATTTCAGACACGAAGAGAAAAGATTGGAGGGTGATGATTCTGCCCCAGTTATTGAGGCTGAAGTTGTTTGTGCCACTTCTGGAAACTCTGCTTCTAGCATGGTACCAACTAGGAAAAATAGAATAAAATGGACCAAAGATTTGCATGAGCAATTTGTTGCAGCTGTCAACAGCCTTGGTGGTCCTCAAAAAGCAAAACCCAAGGCAGTGCTACAGATGATGAATTCAAAGTCGCTCACCATTTTTCATGTTAAAAGTCACTTGCAGAAATATCGGACCACAATGTACATGCAGAACTCTAGCAAGGAGGGATACAAAGAAAGCAAAGGCATAGACATGGTCACTGAACTTCAACAGAAAATCTATATGCAAATTGAGGAATCAAGACTACTGCAACTTGAGATTGGGAGAGGTATTCAAGAACAATTGGAGGCTCAACGAAATTTGCAAATGCTAGTCGAAGAACAAAAGAAACAGGTCAATAGTGTTTGTGGCAAAAATCAAATAAAGCAAATTGGAGGATCCAAATCTTAG

>Glyma02g30714.2   sequence type=CDS   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCATTTTTCGCAGGTATCAAACGGAGCACACAGCAGTGAAGCCGACGTTGGAGGCTCAGAAAAAGACAGCTTCAACTTCCAACGACATGTGTTCGATGTTCCTTTTTCGTGTTTGAAGTTCTATTCACAAAATTTGCTGTGCCAATCTTCTCGGGACGACTCTGCTCCAATGTTCGGAAGTGTTGTTGATTCTTTCTTGTCTAGTGATGAAGACACGTTTTGTGAAACGTATAGAGAATATAGTGAACTTCCTTGCCATGACGTGTCACTTTATGAGCATTTCAGACACGAAGAGAAAAGATTGGAGGGTGATGATTCTGCCCCAGTTATTGAGGCTGAAGTTGTTTGTGCCACTTCTGGAAACTCTGCTTCTAGCATGGTACCAACTAGGAAAAATAGAATAAAATGGACCAAAGATTTGCATGAGCAATTTGTTGCAGCTGTCAACAGCCTTGGTGGTCCTCAAAAAGCAAAACCCAAGGCAGTGCTACAGATGATGAATTCAAAGTCGCTCACCATTTTTCATGTTAAAAGTCACTTGCAGAAATATCGGACCACAATGTACATGCAGAACTCTAGCAAGGAGGGATACAAAGAAAGCAAAGGCATAGACATGGTCACTGAACTTCAACAGAAAATAATTATACTTCTGGCAGCTATATGCAAATTGAGGAATCAAGACTACTGCAACTTGAGATTGGGAGAGGTATTCAAGAACAATTGGAGGCTCAACGAAATTTGCAAATGCTAG

>Glyma02g30714.3   sequence type=CDS   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGGAAGTGTTGTTGATTCTTTCTTGTCTAGTGATGAAGACACGTTTTGTGAAACGTATAGAGAATATAGTGAACTTCCTTGCCATGACGTGTCACTTTATGAGCATTTCAGACACGAAGAGAAAAGATTGGAGGGTGATGATTCTGCCCCAGTTATTGAGGCTGAAGTTGTTTGTGCCACTTCTGGAAACTCTGCTTCTAGCATGGTACCAACTAGGAAAAATAGAATAAAATGGACCAAAGATTTGCATGAGCAATTTGTTGCAGCTGTCAACAGCCTTGGTGGTCCTCAAAAAGCAAAACCCAAGGCAGTGCTACAGATGATGAATTCAAAGTCGCTCACCATTTTTCATGTTAAAAGTCACTTGCAGAAATATCGGACCACAATGTACATGCAGAACTCTAGCAAGGAGGGATACAAAGAAAGCAAAGGCATAGACATGGTCACTGAACTTCAACAGAAAATCTATATGCAAATTGAGGAATCAAGACTACTGCAACTTGAGATTGGGAGAGGTATTCAAGAACAATTGGAGGCTCAACGAAATTTGCAAATGCTAGTCGAAGAACAAAAGAAACAGGTCAATAGTGTTTGTGGCAAAAATCAAATAAAGCAAATTGGAGGATCCAAATCTTAG
Predicted protein sequences of Glyma02g30714
>Glyma02g30714.1   sequence type=predicted peptide   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHFSQVSNGAHSSEADVGGSEKDSFNFQRHVFDVPFSCLKFYSQNLLCQSSRDDSAPMFGSVVDSFLSSDEDTFCETYREYSELPCHDVSLYEHFRHEEKRLEGDDSAPVIEAEVVCATSGNSASSMVPTRKNRIKWTKDLHEQFVAAVNSLGGPQKAKPKAVLQMMNSKSLTIFHVKSHLQKYRTTMYMQNSSKEGYKESKGIDMVTELQQKIYMQIEESRLLQLEIGRGIQEQLEAQRNLQMLVEEQKKQVNSVCGKNQIKQIGGSKS*

>Glyma02g30714.2   sequence type=predicted peptide   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHFSQVSNGAHSSEADVGGSEKDSFNFQRHVFDVPFSCLKFYSQNLLCQSSRDDSAPMFGSVVDSFLSSDEDTFCETYREYSELPCHDVSLYEHFRHEEKRLEGDDSAPVIEAEVVCATSGNSASSMVPTRKNRIKWTKDLHEQFVAAVNSLGGPQKAKPKAVLQMMNSKSLTIFHVKSHLQKYRTTMYMQNSSKEGYKESKGIDMVTELQQKIIILLAAICKLRNQDYCNLRLGEVFKNNWRLNEICKC*

>Glyma02g30714.3   sequence type=predicted peptide   gene model=Glyma02g30714   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGSVVDSFLSSDEDTFCETYREYSELPCHDVSLYEHFRHEEKRLEGDDSAPVIEAEVVCATSGNSASSMVPTRKNRIKWTKDLHEQFVAAVNSLGGPQKAKPKAVLQMMNSKSLTIFHVKSHLQKYRTTMYMQNSSKEGYKESKGIDMVTELQQKIYMQIEESRLLQLEIGRGIQEQLEAQRNLQMLVEEQKKQVNSVCGKNQIKQIGGSKS*






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