SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44740 | AT | Annotation by Michelle Graham. TAIR10: cyclin p4;1 | chr2:18442287-18443304 REVERSE LENGTH=202 | SoyBase | E_val: 5.00E-56 | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR15615 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF08613 | PFAM | Cyclin | JGI | ISS | |
| UniRef100_B7FHT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-U4-1 n=1 Tax=Medicago truncatula RepID=B7FHT5_MEDTR | SoyBase | E_val: 2.00E-56 | ISS |
| UniRef100_UPI000233AF24 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AF24 related cluster n=1 Tax=unknown RepID=UPI000233AF24 | SoyBase | E_val: 1.00E-86 | ISS |
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Glyma02g30692 not represented in the dataset |
Glyma02g30692 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g177700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g30692.2 sequence type=transcript gene model=Glyma02g30692 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCAAGCTGGGGTGAGGGTTGACAATTTCAGCTGCTATGCTTCACCCAGCCGCACGAGACAAACTAATTTCATCACTAAACTGTGTCAAATGATCGCCTTCCTCTCCTCTCTTCTTGAAAGGGTAGCTGAGTCAAATGATCACAACCAACAGCACCAAAAGATCTCAGTGTTCCATGGCTTGACAAGGCCAAACATCTCAATTCAGAGCTACCTTGAGAGAATCTTCAAGTACGCCAACTGCAGCCCCTCGTGCTTCGTCGTCGCCTACGTCTACCTCGACCGATTCACTCAGAGACAACCCTCCCTTCCCATCAACACCTTCAACGTGCACCGTTTGCTGATCACTAGTGTCATGGTAGCTGCCAAGTTCATGGATGACATCATTATATAGTTTACATGGGAGATCATTCACACCCTAATTCAGAATCTGTAATCAGAGCAAACCATGAGATACTAGCTTCAGTTACTGGAAGGCATGTCACTCAATTTAAGATAAAAC
>Glyma02g30692.1 sequence type=CDS gene model=Glyma02g30692 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCAAGCTGGGGTGAGGGTTGACAATTTCAGCTGCTATGCTTCACCCAGCCGCACGAGACAAACTAATTTCATCACTAAACTGTGTCAAATGATCGCCTTCCTCTCCTCTCTTCTTGAAAGGGTAGCTGAGTCAAATGATCACAACCAACAGCACCAAAAGATCTCAGTGTTCCATGGCTTGACAAGGCCAAACATCTCAATTCAGAGCTACCTTGAGAGAATCTTCAAGTACGCCAACTGCAGCCCCTCGTGCTTCGTCGTCGCCTACGTCTACCTCGACCGATTCACTCAGAGACAACCCTCCCTTCCCATCAACACCTTCAACGTGCACCGTTTGCTGATCACTAGTGTCATGGTAGCTGCCAAGTTCATGGATGACATGTGCCAGAGGCCTTGA >Glyma02g30692.2 sequence type=CDS gene model=Glyma02g30692 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCAAGCTGGGGTGAGGGTTGACAATTTCAGCTGCTATGCTTCACCCAGCCGCACGAGACAAACTAATTTCATCACTAAACTGTGTCAAATGATCGCCTTCCTCTCCTCTCTTCTTGAAAGGGTAGCTGAGTCAAATGATCACAACCAACAGCACCAAAAGATCTCAGTGTTCCATGGCTTGACAAGGCCAAACATCTCAATTCAGAGCTACCTTGAGAGAATCTTCAAGTACGCCAACTGCAGCCCCTCGTGCTTCGTCGTCGCCTACGTCTACCTCGACCGATTCACTCAGAGACAACCCTCCCTTCCCATCAACACCTTCAACGTGCACCGTTTGCTGATCACTAGTGTCATGGTAGCTGCCAAGTTCATGGATGACATCATTATATAG
>Glyma02g30692.1 sequence type=predicted peptide gene model=Glyma02g30692 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high FQAGVRVDNFSCYASPSRTRQTNFITKLCQMIAFLSSLLERVAESNDHNQQHQKISVFHGLTRPNISIQSYLERIFKYANCSPSCFVVAYVYLDRFTQRQPSLPINTFNVHRLLITSVMVAAKFMDDMCQRP* >Glyma02g30692.2 sequence type=predicted peptide gene model=Glyma02g30692 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high FQAGVRVDNFSCYASPSRTRQTNFITKLCQMIAFLSSLLERVAESNDHNQQHQKISVFHGLTRPNISIQSYLERIFKYANCSPSCFVVAYVYLDRFTQRQPSLPINTFNVHRLLITSVMVAAKFMDDIII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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