SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06830 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr5:2116882-2119559 REVERSE LENGTH=549 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2607 | KOG | CDK5 activator-binding protein | JGI | ISS | |
| PTHR14894 | Panther | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 | JGI | ISS | |
| PF05600 | PFAM | Protein of unknown function (DUF773) | JGI | ISS | |
| UniRef100_I1JG42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG42_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FG23 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CDK5RAP3-like protein n=1 Tax=Arabidopsis thaliana RepID=CK5P3_ARATH | SoyBase | E_val: 0 | ISS |
|
Glyma02g30360 not represented in the dataset |
Glyma02g30360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g11850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g176900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g30360.2 sequence type=transcript gene model=Glyma02g30360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGAAAGCAAGTTAGCGTTGTCTGCTCTATGTAGCTGACCTACCTAATGGGATATGACTTTGTTGTTGTGTCATGTAGAAAACAATTTATTTTTCTGTTACAAGTGGGTTGTGATTTTATTGTTTTGCAGGGGAAAAATGTCAGAGTAGAACTCTTGGAGACAGCACTATTACTTCCGAGCACGTTTAGCAAAATTCTGGATGTTGTAAACAGTGACAACTTGTCAAGGGCAATTGAGTATTATTCCAATTTTGTCAGGGATGCTCACATTGAAAAGGATAGATCTTTGGGAGACGTACTACAAAACTTGAAGAATATGCGCGAAAATCCCCCATCTTTAAATGTTGCTGTTGACTCTGAGATTATTAATGATGTTAATGTTCATTCAAGCAAAAATGGATTGGATCCTGCAATAGCCAATACTGAAATTGCTGTGCCTGACATTGACTGGGATATTTCTGTGGATAGTTCACAACTTGATTGGGACATTGGAACTGTAGAAGAAACAGAGGATAATGGTAATGGATTGGGTCCATATGAAATCATTAATGCCTCTGACATCGGATCTGATCTAACAATATCAAACCAAGAAATAGGATCACCTGCAGATATATCTTGGGATATTAGTGTGGATACTCCTCAGGTTGATGTCATTGATGATGATAATGCCCCAACTGTAGTGCTGGAGAATCAGACTTCTCTTCCTGATTCCCTATCTCAATTGACAGGAAACAAGGAAGAAAGGAGCCAGCTTTTAGATACGGAGTACAGAAATAAAATTCTTGATGATCTGTATGAGATGAAATCCTTTTTAAATCAACGGTTGGCTGAATTGAGGAATGAGGAAACTTTGTCCCTGCAACATCAAGTCCAGGCAGTTGCACCCTTTGTACTACAGCAGTATGCTGCTGATGCCATTGAAACAATGCAAAGTGATATTTCTTTGGCAATTTCATTGCTGACAAATAGGAAGACAAGGGATCTGATTATGATTCTCAACTCCAAAAGATTTCTAGATAGACTAGTCAATTCATTAGAAGAAAAGAAACATCATGAAGTCAAGTTGAAAGAGGGGTTGAAGGACTTGGCTGCTAAACGTATGGAACTGCAAAATTCTTTATCTTCGTCATGGTCAAAGCAAGATGCGGCTGTGGCAAAAACAAAAGAGCTGAAAAAACTATGTGAGAGTACACTTTCATCCATGTTTGATGGGAGACCAGTTAATATAATTGGAGAGATCAATGCTATTTTGACTAGTGGACTTGGAGCATGAGGAAGAGAAATTTCCTCCGATGATGATCAAGCCTTTAGGTGGATAGTGGCTGCCAAAATAGCTTAAGATAAATTTCTTTTAGTTCTTATTTTTTATATTACCTGTTCATTTCTGACAAACAGTGCTTTGACAATGCCAAGGGTACATGCGCTGATAATTCTCACTGAATGAAGTAACTTTTGGTACTTGGTCATTCTGCTGTTGTGTCCTTGTTGGTTTTACAAGCCGAGGATACCACTGGATACAATTTTTTTGGCTTATTATTTGTATTATTTTTTAATTCCAAGTAAGGATGTAGAGCCTAGGCAATAAGTGCATGTTTCCCACGGCACGAGAGCCAAGTCATCTGACCGAGTTGCTATAAGTCTAGGTGTCCACTAAAAAGTTTGAATAATATTACGAAACATCAGATTCACTATTATCAAAAAATGAATATCAGTTCATGTTGGGCCAT
>Glyma02g30360.1 sequence type=CDS gene model=Glyma02g30360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACTCCCGATGACGTTCGCAACCTTCCCATCGACATCACTTTCTCTCGTCTGGGAGAATGGTTGGTGGATCGCAAGCGAGTGCCCGCTGATTGGCGCAAGCGCGTGGCGGCGATCAGGGCCCGAATTTCCAAGGAGTTCCCCTCTCTCCCTAAGGACTCTGACCCCTTTTTCCAAACCCTAGACCCCGAAGGGATTGGTTATTTGGAGGCTAAACAGATATATGATGATCTCTTAAAGTCTACCTCGGAGAGCAGGAACATATTTGGTCGCTTATCAGGTGCTGCGGGTGCGTGGGAAGCAATTGTGCGGTCCTTTGAGAAGGATCATGTTTTCCTTGGTGAGGCTGCGCAGATTCTGATTCAAAATGTGAGCTATGAAATCCCTTATCAGAGGAAACAGGTGCAGAAGATTCAGCAGCATCTGTTAGAGCTAGATCGCAAGGAGGCTGATATAAAAAGAAGTGCTGCGCTTTCGGCCACCAAATATGCTGAAGCTTGTCAGGAGCTTGGCTTACAGGGGAAAAATGTCAGAGTAGAACTCTTGGAGACAGCACTATTACTTCCGAGCACGTTTAGCAAAATTCTGGATGTTGTAAACAGTGACAACTTGTCAAGGGCAATTGAGTATTATTCCAATTTTGTCAGGGATGCTCACATTGAAAAGGATAGATCTTTGGGAGACGTACTACAAAACTTGAAGAATATGCGCGAAAATCCCCCATCTTTAAATGTTGCTGTTGACTCTGAGATTATTAATGATGTTAATGTTCATTCAAGCAAAAATGGATTGGATCCTGCAATAGCCAATACTGAAATTGCTGTGCCTGACATTGACTGGGATATTTCTGTGGATAGTTCACAACTTGATTGGGACATTGGAACTGTAGAAGAAACAGAGGATAATGGTAATGGATTGGGTCCATATGAAATCATTAATGCCTCTGACATCGGATCTGATCTAACAATATCAAACCAAGAAATAGGATCACCTGCAGATATATCTTGGGATATTAGTGTGGATACTCCTCAGGTTGATGTCATTGATGATGATAATGCCCCAACTGTAGTGCTGGAGAATCAGACTTCTCTTCCTGATTCCCTATCTCAATTGACAGGAAACAAGGAAGAAAGGAGCCAGCTTTTAGATACGGAGTACAGAAATAAAATTCTTGATGATCTGTATGAGATGAAATCCTTTTTAAATCAACGGTTGGCTGAATTGAGGAATGAGGAAACTTTGTCCCTGCAACATCAAGTCCAGGCAGTTGCACCCTTTGTACTACAGCAGTATGCTGCTGATGCCATTGAAACAATGCAAAGTGATATTTCTTTGGCAATTTCATTGCTGACAAATAGGAAGACAAGGGATCTGATTATGATTCTCAACTCCAAAAGATTTCTAGATAGACTAGTCAATTCATTAGAAGAAAAGAAACATCATGAAGTCAAGTTGAAAGAGGGGTTGAAGGACTTGGCTGCTAAACGTATGGAACTGCAAAATTCTTTATCTTCGTCATGGTCAAAGCAAGATGCGGCTGTGGCAAAAACAAAAGAGCTGAAAAAACTATGTGAGAGTACACTTTCATCCATGTTTGATGGGAGACCAGTTAATATAATTGGAGAGATCAATGCTATTTTGACTAGTGGACTTGGAGCATGA >Glyma02g30360.2 sequence type=CDS gene model=Glyma02g30360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATATGACTTTGTTGTTGTGTCATGTAGAAAACAATTTATTTTTCTGTTACAAGTGGGTTGTGATTTTATTGTTTTGCAGGGGAAAAATGTCAGAGTAGAACTCTTGGAGACAGCACTATTACTTCCGAGCACGTTTAGCAAAATTCTGGATGTTGTAAACAGTGACAACTTGTCAAGGGCAATTGAGTATTATTCCAATTTTGTCAGGGATGCTCACATTGAAAAGGATAGATCTTTGGGAGACGTACTACAAAACTTGAAGAATATGCGCGAAAATCCCCCATCTTTAAATGTTGCTGTTGACTCTGAGATTATTAATGATGTTAATGTTCATTCAAGCAAAAATGGATTGGATCCTGCAATAGCCAATACTGAAATTGCTGTGCCTGACATTGACTGGGATATTTCTGTGGATAGTTCACAACTTGATTGGGACATTGGAACTGTAGAAGAAACAGAGGATAATGGTAATGGATTGGGTCCATATGAAATCATTAATGCCTCTGACATCGGATCTGATCTAACAATATCAAACCAAGAAATAGGATCACCTGCAGATATATCTTGGGATATTAGTGTGGATACTCCTCAGGTTGATGTCATTGATGATGATAATGCCCCAACTGTAGTGCTGGAGAATCAGACTTCTCTTCCTGATTCCCTATCTCAATTGACAGGAAACAAGGAAGAAAGGAGCCAGCTTTTAGATACGGAGTACAGAAATAAAATTCTTGATGATCTGTATGAGATGAAATCCTTTTTAAATCAACGGTTGGCTGAATTGAGGAATGAGGAAACTTTGTCCCTGCAACATCAAGTCCAGGCAGTTGCACCCTTTGTACTACAGCAGTATGCTGCTGATGCCATTGAAACAATGCAAAGTGATATTTCTTTGGCAATTTCATTGCTGACAAATAGGAAGACAAGGGATCTGATTATGATTCTCAACTCCAAAAGATTTCTAGATAGACTAGTCAATTCATTAGAAGAAAAGAAACATCATGAAGTCAAGTTGAAAGAGGGGTTGAAGGACTTGGCTGCTAAACGTATGGAACTGCAAAATTCTTTATCTTCGTCATGGTCAAAGCAAGATGCGGCTGTGGCAAAAACAAAAGAGCTGAAAAAACTATGTGAGAGTACACTTTCATCCATGTTTGATGGGAGACCAGTTAATATAATTGGAGAGATCAATGCTATTTTGACTAGTGGACTTGGAGCATGA
>Glyma02g30360.1 sequence type=predicted peptide gene model=Glyma02g30360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTPDDVRNLPIDITFSRLGEWLVDRKRVPADWRKRVAAIRARISKEFPSLPKDSDPFFQTLDPEGIGYLEAKQIYDDLLKSTSESRNIFGRLSGAAGAWEAIVRSFEKDHVFLGEAAQILIQNVSYEIPYQRKQVQKIQQHLLELDRKEADIKRSAALSATKYAEACQELGLQGKNVRVELLETALLLPSTFSKILDVVNSDNLSRAIEYYSNFVRDAHIEKDRSLGDVLQNLKNMRENPPSLNVAVDSEIINDVNVHSSKNGLDPAIANTEIAVPDIDWDISVDSSQLDWDIGTVEETEDNGNGLGPYEIINASDIGSDLTISNQEIGSPADISWDISVDTPQVDVIDDDNAPTVVLENQTSLPDSLSQLTGNKEERSQLLDTEYRNKILDDLYEMKSFLNQRLAELRNEETLSLQHQVQAVAPFVLQQYAADAIETMQSDISLAISLLTNRKTRDLIMILNSKRFLDRLVNSLEEKKHHEVKLKEGLKDLAAKRMELQNSLSSSWSKQDAAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGLGA* >Glyma02g30360.2 sequence type=predicted peptide gene model=Glyma02g30360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYDFVVVSCRKQFIFLLQVGCDFIVLQGKNVRVELLETALLLPSTFSKILDVVNSDNLSRAIEYYSNFVRDAHIEKDRSLGDVLQNLKNMRENPPSLNVAVDSEIINDVNVHSSKNGLDPAIANTEIAVPDIDWDISVDSSQLDWDIGTVEETEDNGNGLGPYEIINASDIGSDLTISNQEIGSPADISWDISVDTPQVDVIDDDNAPTVVLENQTSLPDSLSQLTGNKEERSQLLDTEYRNKILDDLYEMKSFLNQRLAELRNEETLSLQHQVQAVAPFVLQQYAADAIETMQSDISLAISLLTNRKTRDLIMILNSKRFLDRLVNSLEEKKHHEVKLKEGLKDLAAKRMELQNSLSSSWSKQDAAVAKTKELKKLCESTLSSMFDGRPVNIIGEINAILTSGLGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
