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Report for Sequence Feature Glyma02g29830

Feature Type:gene_model
Chromosome:Gm02
Start:31661914
stop:31665709
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g29830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42280AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359 SoyBaseE_val: 5.00E-89ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046685GO-bp Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR10985Panther BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED JGI ISS
PTHR10985:SF42Panther SUBFAMILY NOT NAMED JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_B9T2D6UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2D6_RICCO SoyBaseE_val: 1.00E-130ISS
UniRef100_UPI0002337229UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337229 related cluster n=1 Tax=unknown RepID=UPI0002337229 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g29830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g29830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g175700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g29830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g29830
>Glyma02g29830.1   sequence type=CDS   gene model=Glyma02g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCCATATCCATCATCATCAAAGTTACCAACAACAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCTAGCTCTCTTCTTTCAAATCTCACACCTTCTTTTGTGAGTGAAGACTTTGGTTCTAGCAGCTTCAGAGAGTTGGAAGGAAACAACAACAAGGGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGGGTTTATGGTGGGGGGTTGCCACCTCACTATCCAAGGCATGGTTCTTCTTCTTCTACTTCGAGTTCTGCTATGGAAGGGTCTTATGGGATGGTGAGTTCAATGGGATTGGATCATGAAGCGCCGCATAAGGGGTTTGGGTCAAGTCTTCTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAATAACAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGCGGTGAATGGAAGTAATGGTGAACTTAGTCCATGCATTAACAGATTGAAGAACCAGGTTAGCTTCTCACCAAGAAATGCTTCTTCCCTGGGAATGTTGTCGCAGATCTCTGAATTAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATACTAAACATGGAGGTAATGATACTCAACATTATGGCCCCGGATTCCCCTTTGGTTCTTGGAATGATACTCCACAACTCTCAGAAAATATCAGTGGCTTGAAAAGAGGGAGAAGTGGCAATGAAAAGATGTTTTCTGATGTTCAGAATGGAGAGCTAGCAAACCAAGTTAATATGTTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACTATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCACACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAAAGGGCAAACTGCAAGTGTATAAGCATGCCAAAGGCAGATACAAATCAAATTGCTTGA
Predicted protein sequences of Glyma02g29830
>Glyma02g29830.1   sequence type=predicted peptide   gene model=Glyma02g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSHIHHHQSYQQQNQPSSGLLRFRSAPSSLLSNLTPSFVSEDFGSSSFRELEGNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHGSSSSTSSSAMEGSYGMVSSMGLDHEAPHKGFGSSLLRQSSSPAGLFSNNNISFQNGFATMKGVGNYGAVNGSNGELSPCINRLKNQVSFSPRNASSLGMLSQISELGSEDIEATSPDDDTKHGGNDTQHYGPGFPFGSWNDTPQLSENISGLKRGRSGNEKMFSDVQNGELANQVNMLSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPHMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCISMPKADTNQIA*






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