Glyma02g29472 - SoyBase

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Report for Sequence Feature Glyma02g29472

Feature Type:	gene_model
Chromosome:	Gm02
Start:	31131311
stop:	31132992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29472

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51150	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein \| chr5:20789034-20791495 FORWARD LENGTH=531	SoyBase	E_val: 2.00E-48	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_G7I2M2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7I2M2_MEDTR	SoyBase	E_val: 1.00E-61	ISS
UniRef100_UPI0002337228	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337228 related cluster n=1 Tax=unknown RepID=UPI0002337228	SoyBase	E_val: 3.00E-70	ISS

Expression Patterns of Glyma02g29472

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g29472 not represented in the dataset	Glyma02g29472 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g29472 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g174600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g29472

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g29472

Limit To All Plant Sequences

>Glyma02g29472.2   sequence type=transcript   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAACTAGAAAGCAATTAAGGGAAGCTCTAACAAACCCATGAAAGGACCAACTTGTTAGAGTGATAACCACGTCTCTGTGATGTGGCTCTATTCTCCATTCCCATGGCACCACCATCCTCTCCTCCGCTCGTCGACAATTGCGATGCCGAGCGCCGCCTTCGCGAAGCGGAGGAGCGCCTCCGGGACGCCATCGAGGAGCTCCAGCGCCGGCAGCGCCGCGCCGCCTCTCACGCCCAGCAGCACCGCCACGTGGACTCGCCGCCCTGCGATCACGGCCCCGACGAGTCCTGCTTGGCTCACGCCATTGGCAACCTCTGCCTGACCTTCCTCCTCTCCTACGGCGTCAGAGTCGGCATTGGCATACTCCTCCTCGCCTTCAAGCTTGTTGGAGGACAATCCTACTCCTCTCTCCTCGATCTCAAGCTAATATGATTCGGTGGAATGGTTGAAGCTTTTGTAGGTTTCAGTTGTTGTCAGCAACATGTTTCAGAAAAAGATCTGATAGTAAGGGAAGAAGCATGCCGCATTGGTATTCTTTTTGGTGGTTTCACTGGATTTTATCATGCTCTTAGATGCTTGTTGCGAAAATAAAGGGCAGAAACTTGTTTTATTTATAATTATAATTATGCCATCGCCTTTTGTTAACATCCGTCTAGTGATGTTAAATCCTATCTTTGTAGTAGCTGAGTGAGCTTCACCAACTGTAATCAAAATAAAGGTTACGGTGGATTAAATCCATTGTAATTTAGTTTTTAATTTATTAAAATTAAAACCTAAAAGCTCTCTCACTCAATCATCAGTCATCACTCACCATGTCGCTCAACCTCAACCTAAAACCTAAATGCACCACTCTCTCACTCTGCCACTACCGTTGCACACCCTTGTTGCCATCGATGTTCAAGATCATGAACCCGAAGAAAACCGTTGCACACCCTCTGGTCTATGTCCATGGTGGTGATTCCGAACAATGTGAAAATACAACACACAAAACAATAAAATGAACACTTGGATGAAGCTTTATATTTTGTATGTCATTTTCTTGATATGGTATTTTATAATTTTTTTTTAAAAATTCTTTATGAGCTATGGAGAAAAAGAGAACCAAATTTGAAATATCTTAAAGTGTGGGGTGTCTAATAAAGGTTAACATCCTTATTAATAAAAAAAGAAAATTGACAAAAAGAAAATGTTAATTGTATTTTTGTTGGATATTCTTTACATAATATTACTTATAGATTTTTAGTTGTTAT

>Glyma02g29472.3   sequence type=transcript   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAACTAGAAAGCAATTAAGGGAAGCTCTAACAAACCCATGAAAGGACCAACTTGTTAGAGTGATAACCACGTCTCTGTGATGTGGCTCTATTCTCCATTCCCATGGCACCACCATCCTCTCCTCCGCTCGTCGACAATTGCGATGCCGAGCGCCGCCTTCGCGAAGCGGAGGAGCGCCTCCGGGACGCCATCGAGGAGCTCCAGCGCCGGCAGCGCCGCGCCGCCTCTCACGCCCAGCAGCACCGCCACGTGGACTCGCCGCCCTGCGATCACGGCCCCGACGAGTCCTGCTTGGCTCACGCCATTGGCAACCTCTGCCTGACCTTCCTCCTCTCCTACGGCGTCAGAGTCGGCATTGGCATACTCCTCCTCGCCTTCAAGCTTGTTGGAGGACAATCCTACTCCTCTCTCCTCGATCTCAAGCTAATATGATTCGGTGGAATGGTTGAAGCTTTTGTAGGTTTCAGTTGTTGTCAGGTAATATTCTGTTGCATGAAAGTATTGGCTATTGGCTATATTGTATATGTTAGATGGTTAGCATATCTGTTTTTATACAAATACAAATTGGGGAACAAATGATGAGGTTATGGATTTTATTTTATTTTTGTTTCCAGCAACATGTTTCAGAAAAAGATCTGATAGTAAGGGAAGAAGCATGCCGCATTGGTATTCTTTTTGGTGGTTTCACTGGATTTTATCATGCTCTTAGATGCTTGTTGCGAAAATAAAGGGCAGAAACTTGTTTTATTTATAATTATAATTATGCCATCGCCTTTTGTTAACATCCGTCTAGTGATGTTAAATCCTATCTTTGTAGTAGCTGAGTGAGCTTCACCAACTGTAATCAAAATAAAGGTTACGGTGGATTAAATCCATTGTAATTTAGTTTTTAATTTATTAAAATTAAAACCTAAAAGCTCTCTCACTCAATCATCAGTCATCACTCACCATGTCGCTCAACCTCAACCTAAAACCTAAATGCACCACTCTCTCACTCTGCCACTACCGTTGCACACCCTTGTTGCCATCGATGTTCAAGATCATGAACCCGAAGAAAACCGTTGCACACCCTCTGGTCTATGTCCATGGTGGTGATTCCGAACAATGTGAAAATACAACACACAAAACAATAAAATGAACACTTGGATGAAGCTTTATATTTTGTATGTCATTTTCTTGATATGGTATTTTATAATTTTTTTTTAAAAATTCTTTATGAGCTATGGAGAAAAAGAGAACCAAATTTGAAATATCTTAAAGTGTGGGGTGTCTAATAAAGGTTAACATCCTTATTAATAAAAAAAGAAAATTGACAAAAAGAAAATGTTAATTGTATTTTTGTTGGATATTCTTTACATAATATTACTTATAGATTTTTAGTTGTTAT

Coding sequences of Glyma02g29472

Limit To All Plant Sequences

>Glyma02g29472.1   sequence type=CDS   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCACCATCCTCTCCTCCGCTCGTCGACAATTGCGATGCCGAGCGCCGCCTTCGCGAAGCGGAGGAGCGCCTCCGGGACGCCATCGAGGAGCTCCAGCGCCGGCAGCGCCGCGCCGCCTCTCACGCCCAGCAGCACCGCCACGTGGACTCGCCGCCCTGCGATCACGGCCCCGACGAGTCCTGCTTGGCTCACGCCATTGGCAACCTCTGCCTGACCTTCCTCCTCTCCTACGGCGTCAGAGTCGGCATTGGCATACTCCTCCTCGCCTTCAAGCTTGTTGGAGGACAATCCTACTCCTCTCTCCTCGATCTCAAGCAACATGTTTCAGAAAAAGATCTGATAGTAAGGGAAGAAGCATGCCGCATTGGTATTCTTTTTGGTGGTTTCACTGGATTTTATCATGCTCTTAGATGCTTGTTGCGAAAATAA

>Glyma02g29472.2   sequence type=CDS   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCACCATCCTCTCCTCCGCTCGTCGACAATTGCGATGCCGAGCGCCGCCTTCGCGAAGCGGAGGAGCGCCTCCGGGACGCCATCGAGGAGCTCCAGCGCCGGCAGCGCCGCGCCGCCTCTCACGCCCAGCAGCACCGCCACGTGGACTCGCCGCCCTGCGATCACGGCCCCGACGAGTCCTGCTTGGCTCACGCCATTGGCAACCTCTGCCTGACCTTCCTCCTCTCCTACGGCGTCAGAGTCGGCATTGGCATACTCCTCCTCGCCTTCAAGCTTGTTGGAGGACAATCCTACTCCTCTCTCCTCGATCTCAAGCTAATATGA

>Glyma02g29472.3   sequence type=CDS   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCACCATCCTCTCCTCCGCTCGTCGACAATTGCGATGCCGAGCGCCGCCTTCGCGAAGCGGAGGAGCGCCTCCGGGACGCCATCGAGGAGCTCCAGCGCCGGCAGCGCCGCGCCGCCTCTCACGCCCAGCAGCACCGCCACGTGGACTCGCCGCCCTGCGATCACGGCCCCGACGAGTCCTGCTTGGCTCACGCCATTGGCAACCTCTGCCTGACCTTCCTCCTCTCCTACGGCGTCAGAGTCGGCATTGGCATACTCCTCCTCGCCTTCAAGCTTGTTGGAGGACAATCCTACTCCTCTCTCCTCGATCTCAAGCTAATATGA

Predicted protein sequences of Glyma02g29472

Limit To All Plant Sequences

>Glyma02g29472.1   sequence type=predicted peptide   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPSSPPLVDNCDAERRLREAEERLRDAIEELQRRQRRAASHAQQHRHVDSPPCDHGPDESCLAHAIGNLCLTFLLSYGVRVGIGILLLAFKLVGGQSYSSLLDLKQHVSEKDLIVREEACRIGILFGGFTGFYHALRCLLRK*

>Glyma02g29472.2   sequence type=predicted peptide   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPSSPPLVDNCDAERRLREAEERLRDAIEELQRRQRRAASHAQQHRHVDSPPCDHGPDESCLAHAIGNLCLTFLLSYGVRVGIGILLLAFKLVGGQSYSSLLDLKLI*

>Glyma02g29472.3   sequence type=predicted peptide   gene model=Glyma02g29472   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPSSPPLVDNCDAERRLREAEERLRDAIEELQRRQRRAASHAQQHRHVDSPPCDHGPDESCLAHAIGNLCLTFLLSYGVRVGIGILLLAFKLVGGQSYSSLLDLKLI*

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