SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12130 | AT | Annotation by Michelle Graham. TAIR10: KH domain-containing protein / zinc finger (CCCH type) family protein | chr3:3864486-3866406 REVERSE LENGTH=248 | SoyBase | E_val: 3.00E-70 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10288 | Panther | RNA-BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR10288:SF5 | Panther | KH RNA BINDING DOMAIN PROTEIN | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_G7KVD0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KVD0_MEDTR | SoyBase | E_val: 2.00E-151 | ISS |
| UniRef100_I1JG21 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG21_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g29360 not represented in the dataset |
Glyma02g29360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g173900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g29360.1 sequence type=CDS gene model=Glyma02g29360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGTTCGCAAGCGCGGAAGGCCCGACGTCAACCTTAACGGCGCCGTTAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGTACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTACATTATGTTCCAGGTGGTTACAATGTTGTTGCCCATATGATGAATTTAAAACCCGCGGCTCCTCCACCAAGAACCGTTGCTGCACCACCACCCATCCCGAATGGTTCTGCTCCATCTGCTGTTAAAACCCGCATATGTAACAAATTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCAATTGATGATCATCATCATCATCGTCCTTTGGGACCTCCAGCAGGTGGTCGTATGGCTGGTCGAATTGAGCCTCCTCCCGCTATGGCTGGTAGCTTTGGTGCCATTTCTACCGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGAGCACGAATCCGATCCAAATCTTAGAAACATTGAACTCGAGGGAACTTTTGAACAGATTAAGGAAGCAAGTAACATGGTAAAAGATTTACTTTTGACCGTGTCAATGTCTGCCCCACCAAAATCCACCCCAGGTGTTCCTGGTGCCCCTGCCCCCCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCGGGAGTATGA
>Glyma02g29360.1 sequence type=predicted peptide gene model=Glyma02g29360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVRKRGRPDVNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNVVAHMMNLKPAAPPPRTVAAPPPIPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHHHHRPLGPPAGGRMAGRIEPPPAMAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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