Glyma02g29250 - SoyBase

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Report for Sequence Feature Glyma02g29250

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30733173
stop:	30743476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32050	AT	Annotation by Michelle Graham. TAIR10: neurochondrin family protein \| chr4:15496620-15500717 FORWARD LENGTH=618	SoyBase	E_val: 0	ISS
GO:0007346	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG2611	KOG	Neurochondrin/leucine-rich protein (Neurochondrin)	JGI		ISS
PTHR13109	Panther	NEUROCHONDRIN	JGI		ISS
PTHR13109:SF1	Panther	NEUROCHONDRIN-1	JGI		ISS
PF05536	PFAM	Neurochondrin	JGI		ISS
UniRef100_G7JAE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neurochondrin n=1 Tax=Medicago truncatula RepID=G7JAE3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JG18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g29250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g29250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g173300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g29250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g29250

Limit To All Plant Sequences

>Glyma02g29250.1   sequence type=CDS   gene model=Glyma02g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCCAGCGAATCTGGAGGAGGAGTGCTTGAAACTTCTGAAAGGAGAGCGAGACGAACAGCGTCTGGCTGGGCTTCTTCTGGTAACCAAGTTCTGCAAAGCTGAGGATCAGTCCTCAGTCCGTAGGGTCTACGATGCGGTTGGACCTCACTTTCTCTATCGCCTCCTCAGAACCGGTATGGCAAGCGGAGGAGGAGGCCTCAACGATAACCGGAATGCCTACTTAAGCTTATCCATCACGGTTCTCGCCACATTTTGTCGTGTTCCAGATATTGCTTCCTCGGAGGACATGCTTTTCTATATCCCCCTTGTCTTGGAAGTAATATCCACCGGGTCTGTCTTATCTGTTCTTGAAGAATGCTATGAGTTTCTATACTTGGTGTCAGCTGCTTCTGAAAGTGGAATCGCGAGATTTTTCGAATCCGGAGGCATCAAGATACTAGCTTCTCAAATGCGTTCTCTTCACGATGGTTCACATCTGATGGAATTATCTTTTAAACTTTTGCAATTGATTCTGGGTAGGACGTCCTCGGACATAATTCAGAATAATGACTTATCTGAAATCTCAGTTATTGTGGCAGCAATAGCAAGGCAGTTTGCTGTCTTGCACAATTCCTTGAAATTTGAAGCTCTCCACCTACTAAATGCCATTCTTTCCTCAAAAGATTCATCACAACTTCGTGATGCCTTCCGATTACTTCCTCAAGATAGCTGGTCACCCAATATACGCATTGGTATAATGGCTATTTTGCAGAATCGTGTTGCACCTGCTGAAAGGTTGCAGGCTCTCATTTTAGCCGAGTCTATGGTTTCCATGTATGGAGAAGATTGGTTGATTGGCCAAGTAAGCACAAATGATGCACTAGATCCAGCTCCAGCTGACATGTGCTTGTTGCTTGTCTTGGAGCAGTCAAGGGTTGAAATTGCTGTTCTTCTGAATGAGTTGGCGTACTTAAAATATGAAGCACCTCAGGATACTTCTGCCACAGCTGAAGCAATTTTTTCAAAGCGACATAATGTGGCTGTTGCTTACTCCTTGGTTGAGAGGATAATAAAATTAATATCAAATGTTGAAGGAAATGATGGAAACCTCCTTGATGAAGGCACATTGACAAAGCTGATTCACCAACTGAATGAGACAATTGCTGTTGTACTAGAGTATTTAGAAGATGCAAAGGAACATGGGCAAAAGAAAGGAGATGATTTACTTGCTTCAGTGCGAATTATTGGGAGCTATCTTGCAGAAGCACCTGTAGCATGCAAGGAGAAGGTTCAAGATCTTTTAGGGTATATGCTTTCTCTTGAAGGTGAAGATGAACAAAGGCCCTTCTACGCTGTTTGCTTTCTGCTACCTATGTTGTCTCAAATTACTATGGAGATTGAAGGATGCAAAGCTTTGGCTTCATGTAAAGGACTTGAGGCTGTTTTAGATTGCTTCAGTAAATTAGTTGGGTCACATGCTTTTCTGGTTGAGGATAATGGTTGCATCTTTATGGCATGTGATACAATAATGAATCTTTTATTAAAGAAAGACAAAGTTCAGATAAAGTTGGATGTATCAGCTATTGTTGATCTTCTTAAAGTGTTGGCTCATTGGTCAGAAAACACTGATGAAATGTCAAGTATGATGATGGCTTCAAGCATTTGTACACTGATATTTGATTATACATCAGAAGAGGCTCTTTTAAACTGTCCAGATTTCGACTATAGAACTCTTAGCAGTCTTTATCTTCTCATTGCAAGATGTCTGGCATCATCAGAACAGGATACTAAAGTGGATATGGATCTTTCTGAGATTGTCTCTTCTGGCTTCTCTCGATGGGCTCATCGGTACCCCCACATCAGAGACGCTGTCAAGAACTAA

Predicted protein sequences of Glyma02g29250

Limit To All Plant Sequences

>Glyma02g29250.1   sequence type=predicted peptide   gene model=Glyma02g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPANLEEECLKLLKGERDEQRLAGLLLVTKFCKAEDQSSVRRVYDAVGPHFLYRLLRTGMASGGGGLNDNRNAYLSLSITVLATFCRVPDIASSEDMLFYIPLVLEVISTGSVLSVLEECYEFLYLVSAASESGIARFFESGGIKILASQMRSLHDGSHLMELSFKLLQLILGRTSSDIIQNNDLSEISVIVAAIARQFAVLHNSLKFEALHLLNAILSSKDSSQLRDAFRLLPQDSWSPNIRIGIMAILQNRVAPAERLQALILAESMVSMYGEDWLIGQVSTNDALDPAPADMCLLLVLEQSRVEIAVLLNELAYLKYEAPQDTSATAEAIFSKRHNVAVAYSLVERIIKLISNVEGNDGNLLDEGTLTKLIHQLNETIAVVLEYLEDAKEHGQKKGDDLLASVRIIGSYLAEAPVACKEKVQDLLGYMLSLEGEDEQRPFYAVCFLLPMLSQITMEIEGCKALASCKGLEAVLDCFSKLVGSHAFLVEDNGCIFMACDTIMNLLLKKDKVQIKLDVSAIVDLLKVLAHWSENTDEMSSMMMASSICTLIFDYTSEEALLNCPDFDYRTLSSLYLLIARCLASSEQDTKVDMDLSEIVSSGFSRWAHRYPHIRDAVKN*

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