Glyma02g29240 - SoyBase

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Report for Sequence Feature Glyma02g29240

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30716774
stop:	30723657
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25440	AT	Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain protein \| chr3:9224294-9225505 FORWARD LENGTH=380	SoyBase	E_val: 3.00E-141	ISS
GO:0042761	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0050291	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sphingosine N-acyltransferase activity	SoyBase	N/A	ISS
PF01985	PFAM	CRS1 / YhbY (CRM) domain	JGI		ISS
UniRef100_G7I7W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CRM domain-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7I7W0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JG17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JG17_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g29240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g29240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g173200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g29240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g29240

Limit To All Plant Sequences

>Glyma02g29240.2   sequence type=CDS   gene model=Glyma02g29240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGGTGCACCTAGCAACACTCTGTTTGGTATCATGGGTTCAGGTGAAACAAATAGGAAAGATAAGATGTCTTCTCTGGGCACTTCCAAAGGGATTCTAGAAATTGCCAAGTTCGGCGTCTATGTCACCGCTCATGTACACTTTCGCCGACAATCCCAGCAACCTCCGCAAGTTCATGGGACATGGTTTAAGCATTGCGGCTTCAATTTTATCTATATCGCATTGGTAGGAAGCAAATCAGAGAGTTTGATTGGGAAGTATGGTGTGGAAGCTTTTGGGAGCACGCCCTCTCTGCTCATATTCTTCTTCTTTGCTTCTCACACCCCTCTTATTTCGCAGCAAAATAAGGAACCTATTTTTGGGCACCTCTGTTACATGAAACCATCTCCTTTCTTGGGGAACGTAAGCTTTCATTCATATCCATTTCTAAAGTTTAACGATAAGGTTGTAGAGCAACAACATCAGGATTCTCAAAAGGCCTCAAGTGCTAATGTTGATGGTGATGGTAATGCCAAAGTAAAGAGGAACAAATTAAAGGGGAAAAGAGCAGTTGTAAGATGGCTCAAGTTCTTTAGATTTAAGAAGAAGAAAGAGTATGAAAGGATGACAGCAGAGGAAAAAAATTTATACAAATTGTTAAAGGCTCGAAAAAAAGAAGAGAGACTTTGTGAAGCTCTGAAAAAGATTGAGCCTGCAGAATCTTCAGAAACAACCCATGATCCTGAGATATTAACCCCAGAAGAGCACTTTTTCTTCTTAAAGATGGGCCTCAAAAGCAAAAATTACGTGCCAGTTGGAAGACGAGGAATTTACCAAGGTGTAATTTTGAACATGCATCTGCATTGGAAAAAGCATCAAACTTTGAAAGTGGTGGTGAAGACATTTTCAGCAGAGGAGGTTAAGGAAATTGCTGCTGAGCTGGCAAGATTGAGCGGAGGTATAGTGCTTGACATTCATGAAGATAACACAATAATAATGTACAGAGGGAAAAACTACTCTCAACCACCAACAGAGATCATGTCTCCACGAGTCTCTCTTTCAAGAAAGAAGGCATTGGATAAATCCAAATACAGGGATGCCCTCCGAGCTGTGAGGAGATATATTCCAAGGCTTGAACAAGAGCTTGAAATTCTTCGTGCTCAATTTAAAAGTTCAGCTGAAAGTAATACAGATGCTGCTGAGGCAATCCAGAACAGTGGCAGAGAGAGTATTGAGTCTGGGAGCATCTCAAATTTCCAGCTACAGAATTCATATAAAGACCGTGAAATGATGAATGTTAACATTGGGAGCACAGAGGATGAGACAGATATGAACTCTGAATTGGATTCTGATTCTGATAAGTTATCAGATATATTTGAGACTGATTCAGATACTGAGAATTTCGTAAAGGAGGAGAAACCTCTTTACTTGGACGAGTTTGATAATTTTCCAGAGCAAAGCGATGGAGAAATGAATGATTTTGAGGAGCATATGCGACAAATGTCTCTGAAATCAAAAAACATGGAAAAGGACGATAACTTACCTAAGTTGGACGAAGTTGACAAGATTTTTCTGCAAGCTACTTCCTTTTTAAAGAAAAAGATAAAATGA

Predicted protein sequences of Glyma02g29240

Limit To All Plant Sequences

>Glyma02g29240.2   sequence type=predicted peptide   gene model=Glyma02g29240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGAPSNTLFGIMGSGETNRKDKMSSLGTSKGILEIAKFGVYVTAHVHFRRQSQQPPQVHGTWFKHCGFNFIYIALVGSKSESLIGKYGVEAFGSTPSLLIFFFFASHTPLISQQNKEPIFGHLCYMKPSPFLGNVSFHSYPFLKFNDKVVEQQHQDSQKASSANVDGDGNAKVKRNKLKGKRAVVRWLKFFRFKKKKEYERMTAEEKNLYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHEDNTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQELEILRAQFKSSAESNTDAAEAIQNSGRESIESGSISNFQLQNSYKDREMMNVNIGSTEDETDMNSELDSDSDKLSDIFETDSDTENFVKEEKPLYLDEFDNFPEQSDGEMNDFEEHMRQMSLKSKNMEKDDNLPKLDEVDKIFLQATSFLKKKIK*

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