Glyma02g29190 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g29190

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30681586
stop:	30684774
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04600	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:1323700-1325486 FORWARD LENGTH=222	SoyBase	E_val: 2.00E-94	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4208	KOG	Nucleolar RNA-binding protein NIFK	JGI		ISS
PTHR23365	Panther	POLY-A BINDING PROTEIN 2	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7IAS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein n=1 Tax=Medicago truncatula RepID=G7IAS2_MEDTR	SoyBase	E_val: 8.00E-108	ISS
UniRef100_I1JG14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG14_SOYBN	SoyBase	E_val: 1.00E-153	ISS

Expression Patterns of Glyma02g29190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g29190

Paralog	Evidence	Comments
Glyma09g17080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g29190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g173000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g29190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g29190

Limit To All Plant Sequences

>Glyma02g29190.2   sequence type=transcript   gene model=Glyma02g29190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCCTCGTAACTTAACCTAAAAGCATAAAACCCTTTTGTGTTTGCGCCGCTCTCAAGCCTCAGACTCGCGACTCACCACCACTGCTCAGACTGCTCGCCGGCCTCTAATTTATCAAAGCTTCTGCGCCTCCCACGTTATTTTCAATACTCTCTTGGGGTTCGCATAGTGAGATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGAGGGGTTTGACCACATTGAGCTCATTGAGTATACCTTGAAATTATATTGTGATGAGAGCCATGTTGAGAACTATCCGGCACTGAAGAAGTGAAATGGTTATTGTTTGAGGAAAAAACAAAATACACGTGAGAAGTGAAATGGTTATTGTTTGAGGAAAAAACAAAATACACGTGAGAAGTAAAATGGTTATTATTCAAGGGAAAGTTGAGTTTGTTTTGTATTTTTTGACCATCAGAATATAGACTCGGACGCTGGTTGACGTGGGAGAGTGGATTAGTTCTCCCATGGGAGTTATTTTGTCCCATTGAATATATTCATATTTAGTTTAATGGTCAAGATTTTTTCTCTTTCTTTTTCTTTTTCTTTTTCCCATTCTACCCATTCTTCACCCATTCTTAATCACTGTGGGTGGCAGTGGT

Coding sequences of Glyma02g29190

Limit To All Plant Sequences

>Glyma02g29190.1   sequence type=CDS   gene model=Glyma02g29190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGA

>Glyma02g29190.2   sequence type=CDS   gene model=Glyma02g29190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGA

Predicted protein sequences of Glyma02g29190

Limit To All Plant Sequences

>Glyma02g29190.1   sequence type=predicted peptide   gene model=Glyma02g29190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKAKKAMNNLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKERTLKEHQKLVDKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED*

>Glyma02g29190.2   sequence type=predicted peptide   gene model=Glyma02g29190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKAKKAMNNLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKERTLKEHQKLVDKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain