Glyma02g29160 - SoyBase

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Report for Sequence Feature Glyma02g29160

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30620856
stop:	30624258
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53750	AT	Annotation by Michelle Graham. TAIR10: actin 3 \| chr3:19915924-19917371 FORWARD LENGTH=377	SoyBase	E_val: 0	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0676	KOG	Actin and related proteins	JGI		ISS
PTHR11937	Panther	ACTIN	JGI		ISS
PTHR11937:SF77	Panther	ACTIN	JGI		ISS
PF00022	PFAM	Actin	JGI		ISS
UniRef100_G3FLW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin 4 n=1 Tax=Mangifera indica RepID=G3FLW0_MANIN	SoyBase	E_val: 0	ISS
UniRef100_I1JG11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG11_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g29160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g29160 not represented in the dataset	Glyma02g29160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g29160

Paralog	Evidence	Comments
Glyma09g17040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g29160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g172800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g29160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g29160

Limit To All Plant Sequences

>Glyma02g29160.4   sequence type=transcript   gene model=Glyma02g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAACTTGCCTTTTTTAAACCAAACTGCGGGCACCTCAGGCCTCAGCCACACAAAGCCACGTTCGTTAAAAATAGAAAGCACAACACATAAGCCACGCACACGTAGCTTCCTTCATTTCGGAAATTCTAAGCAATCATTAAAAGATGGCAGATGGTGAGGATATACAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGACGCATATGTTGGTGATGAGGCTCAATCCAAGAGGGGTATTTTAACACTGAAATACCCAATTGAGCATGGCATAGTTAACAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTATAACGAGCTGCGTGTGGCCCCGGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTTAATCCCAAGGCCAACCGTGAGAAAATGACACAGATTATGTTTGAGACCTTCAACACTCCGGCTATGTATGTTGCCATCCAAGCAGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTATGAAGGCTATGCACTGCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGACCTCACCGATGCCCTCATGAAGATCTTAACCGAGCGTGGCTACTCTTTCACCACCACTGCCGAGAGAGAAATTGTGAGAGATGTTAAGGAAAAGTTAGCCTACATTGCTCTTGACTACGAGCAAGAGGTGGAAACAGCAAAGACAAGCTCAGCTGTGGAGAAGAGCTATGAGCTACCTGATGGACAGGTGATCACTATCGGTGCGGAACGGTTCCGTTGCCCTGAAGTGCTCTTCCAGCCATCCATGATTGGGATGGAGTCTCCTGGCATCCATGAGACCACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTCTATGGCAACATTGTGTTGAGTGGTGGCTCAACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTGGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGCCCCTCAATCGTCCACAGGAAATGCTTCTAATGATGCAGAGAGTCCAGGAAATTTTAATATATACTCCGCACTACAGAAATACCATAAAGTGGTTGAGGAAGTTTTATTTTCTATTCTTTACCATTTTTTAACCATGTTTTCGTGTTTCCTTTATTAATATGTTGGGATAAGAGCATGAAAGCAAAGCATGATATATAAGATTTTTTTTTTTTCATTTTATTGTAGAAGAGATGTGTATTGTTATTGATTTGATTTGGTTGAATCAAATTCTCTTAAGCATTTTGATTAGAATAGTGGTATGTATTTTGATTTATTGTTCTGTGAACGAAGAGTCATTCTTGTTCAGTGTTCACGGACCAATCTTTTATATAATATACTTCATATTTGGCCAACTATGCATGTGATATCATAATACAAATTATTGCAGT

Coding sequences of Glyma02g29160

Limit To All Plant Sequences

>Glyma02g29160.3   sequence type=CDS   gene model=Glyma02g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATGGTGAGGATATACAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGACGCATATGTTGGTGATGAGGCTCAATCCAAGAGGGGTATTTTAACACTGAAATACCCAATTGAGCATGGCATAGTTAACAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTATAACGAGCTGCGTGTGGCCCCGGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTTAATCCCAAGGCCAACCGTGAGAAAATGACACAGATTATGTTTGAGACCTTCAACACTCCGGCTATGTATGTTGCCATCCAAGCAGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTATGAAGGCTATGCACTGCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGACCTCACCGATGCCCTCATGAAGATCTTAACCGAGCGTGGCTACTCTTTCACCACCACTGCCGAGAGAGAAATTGTGAGAGATGTTAAGGAAAAGTTAGCCTACATTGCTCTTGACTACGAGCAAGAGGTGGAAACAGCAAAGACAAGCTCAGCTGTGGAGAAGAGCTATGAGCTACCTGATGGACAGGTGATCACTATCGGTGCGGAACGGTTCCGTTGCCCTGAAGTGCTCTTCCAGCCATCCATGATTGGGATGGAGTCTCCTGGCATCCATGAGACCACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTCTATGGCAACATTGTGTTGAGTGGTGGCTCAACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTGGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGCCCCTCAATCGTCCACAGGAAATGCTTCTAA

>Glyma02g29160.4   sequence type=CDS   gene model=Glyma02g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATGGTGAGGATATACAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGACGCATATGTTGGTGATGAGGCTCAATCCAAGAGGGGTATTTTAACACTGAAATACCCAATTGAGCATGGCATAGTTAACAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTATAACGAGCTGCGTGTGGCCCCGGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTTAATCCCAAGGCCAACCGTGAGAAAATGACACAGATTATGTTTGAGACCTTCAACACTCCGGCTATGTATGTTGCCATCCAAGCAGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTATGAAGGCTATGCACTGCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGACCTCACCGATGCCCTCATGAAGATCTTAACCGAGCGTGGCTACTCTTTCACCACCACTGCCGAGAGAGAAATTGTGAGAGATGTTAAGGAAAAGTTAGCCTACATTGCTCTTGACTACGAGCAAGAGGTGGAAACAGCAAAGACAAGCTCAGCTGTGGAGAAGAGCTATGAGCTACCTGATGGACAGGTGATCACTATCGGTGCGGAACGGTTCCGTTGCCCTGAAGTGCTCTTCCAGCCATCCATGATTGGGATGGAGTCTCCTGGCATCCATGAGACCACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTCTATGGCAACATTGTGTTGAGTGGTGGCTCAACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTGGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGCCCCTCAATCGTCCACAGGAAATGCTTCTAA

Predicted protein sequences of Glyma02g29160

Limit To All Plant Sequences

>Glyma02g29160.3   sequence type=predicted peptide   gene model=Glyma02g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQEVETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

>Glyma02g29160.4   sequence type=predicted peptide   gene model=Glyma02g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQEVETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

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