SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42070 | AT | Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 23 | chr2:17549669-17551066 REVERSE LENGTH=280 | SoyBase | E_val: 5.00E-70 | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0042726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavin-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0047884 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FAD diphosphatase activity | SoyBase | N/A | ISS |
| PTHR22769 | Panther | MUTT/NUDIX HYDROLASE | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| UniRef100_G7KVE3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=2 Tax=Medicago truncatula RepID=G7KVE3_MEDTR | SoyBase | E_val: 7.00E-79 | ISS |
| UniRef100_UPI0002336BC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336BC1 related cluster n=1 Tax=unknown RepID=UPI0002336BC1 | SoyBase | E_val: 9.00E-107 | ISS |
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Glyma02g29133 not represented in the dataset |
Glyma02g29133 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g17010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g172600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g29133.1 sequence type=CDS gene model=Glyma02g29133 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGTCCTCTTCTGTTTCAATCTCATCATGGATTCTTCTTCTTATCACTCTCCCCCATCATCACTTCATTCTTTTGGAGATGTTCAAAACGTTAAGTTCTGTCAGTGGTGTGGTGGTCCAACGAAGCATGAAATACCGGAAGAAAGGTTGAGAGTTATATGTACAAGTTGTGGGAAGATTACCTATCAGAATCCAAAAATGTTTCATATTTTGGTGTCAACAAGGACACTTCCTGATGGTTATTTAGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACACGGGAGGAAGCCAATGTTGACGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGCCAAATTTTTGGTCATGATTATGGCATCTTAGCAAGGTTGAAGAAACCTCACTTTTCACTTGGTCCAGAATCATCAGAATGCCAGCTTTTCTCACTCAATGAAATACCCTACAGTTCTTTATCTTTTTCATCAATGGTTGTTACTTTAAGTTTGTATGTTGAGGATATGAAGGAAGGAGGAAAGCCTAAATTCCATTATGTTACCATTATCAAAAGGTATTTCCATCTTAAGTATAGAATATCTATCTATTTATCTATTATCTATAATATATAA
>Glyma02g29133.1 sequence type=predicted peptide gene model=Glyma02g29133 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VVLFCFNLIMDSSSYHSPPSSLHSFGDVQNVKFCQWCGGPTKHEIPEERLRVICTSCGKITYQNPKMFHILVSTRTLPDGYLEIGESAMEGAIRETREEANVDVEVISPFAQLDIPLIGQIFGHDYGILARLKKPHFSLGPESSECQLFSLNEIPYSSLSFSSMVVTLSLYVEDMKEGGKPKFHYVTIIKRYFHLKYRISIYLSIIYNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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