Glyma02g29100 - SoyBase

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Report for Sequence Feature Glyma02g29100

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30494342
stop:	30497235
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23630	AT	Annotation by Michelle Graham. TAIR10: phosphate deficiency response 2 \| chr5:7960756-7967644 REVERSE LENGTH=1179	SoyBase	E_val: 2.00E-167	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006875	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0048867	GO-bp	Annotation by Michelle Graham. GO Biological Process: stem cell fate determination	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0019829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation-transporting ATPase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR24093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24093:SF48	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
UniRef100_B9RHM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cation-transporting atpase 13a1, putative n=1 Tax=Ricinus communis RepID=B9RHM6_RICCO	SoyBase	E_val: 3.00E-180	ISS
UniRef100_I1KBT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBT2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g29100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g29100 not represented in the dataset	Glyma02g29100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g29100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g29100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g29100

Limit To All Plant Sequences

>Glyma02g29100.1   sequence type=CDS   gene model=Glyma02g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTATAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAAACTCTAACTGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTACATCGCTATGGCAAGTGGGTAAAACTCTCTGGTACAGAGCTTTTGCCTGAGGATGTTGTCTCCATAGGTCGCTCTTCTGGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTCTATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTAACAGGCGAGTCTACCCCTCAATGGAAGATTTCAATTGCGGGTAGGGGGATGGAGGAGACATTGTCAGCAAGGCAAGATAAAAACCATGTGTTATTTGGTGGAACAAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGTTGTTATCTTGAGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACGGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCCTGGTTGTATTTGCTCTTATTGCTGCTGGTTATGTGCTTGTTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATTCCTCCTGAGTATCCAAGGTGCCAGTTTGCTACTACCCCCCAATTAAGTCAGGAGAGGGAGATTTGTTGGGATCCCTCCTTAATTCGAGAGAAGCTTGTGAAAGAATGTGGAAACCTCTGGAATATTCTAGAGATGTGTGGAACCTTCTGGAACCTTATGGAAGGATATGAAAAAGAATCATATGAAATTGGTTTTTATGTAACTTATTGTACATACCTTGCCCTACATGTTGATATATGCTGTTTTGACAAGACAGGGACACTTACTTCTGATGACATGGAATTTTCTGGAATTGTTGGGTTGAATGGAACTACAGATTTGGAATCTGATACGAGTAAAGTGCCTCTGCGAACAGTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTG

Predicted protein sequences of Glyma02g29100

Limit To All Plant Sequences

>Glyma02g29100.1   sequence type=predicted peptide   gene model=Glyma02g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRYGKWVKLSGTELLPEDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIAGRGMEETLSARQDKNHVLFGGTKILQHTPDKSFPLKTPDGGCLVVILRTGFETSQGKLMRTILFSTERVTANSWESGFFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPEYPRCQFATTPQLSQEREICWDPSLIREKLVKECGNLWNILEMCGTFWNLMEGYEKESYEIGFYVTYCTYLALHVDICCFDKTGTLTSDDMEFSGIVGLNGTTDLESDTSKVPLRTVEILASCHALVFVENKL

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