SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72270 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:27199733-27211122 REVERSE LENGTH=2845 | SoyBase | E_val: 2.00E-69 | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| PTHR13500 | Panther | NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1 | JGI | ISS | |
| UniRef100_Q7XPP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0053K19.25 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XPP8_ORYSJ | SoyBase | E_val: 1.00E-43 | ISS |
| UniRef100_UPI0002338AFF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338AFF related cluster n=1 Tax=unknown RepID=UPI0002338AFF | SoyBase | E_val: 2.00E-146 | ISS |
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Glyma02g29090 not represented in the dataset |
Glyma02g29090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g29090.1 sequence type=CDS gene model=Glyma02g29090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAAAGAACGTTATGATCCTGTATTTATATTGCGATTTTCAATTCATAGTCTCTCAAAGGCTTATGTAGCGCCTGTGGAGTTTGCTGGTTCAGGGTTGCTTGCGATTGCATTTGTTAGCTTGTCTTCCCCAGACCAAGGGATAAGAAGATTAGCGTATGGCACTCTTGATAAATTTAAGAATGCAGTAGAGAAGTGCCAAAAGAGGAAGGATGTAATGGGACTTCGGCTTCTATTAAATTCTGTTCAAAACAGCATAGAAGAGCCATGGCAAAGAATCCCATCAGTTATTGCTTTATTTGCTGCAGAGGCATCTTGTGTATTGTTAGATCCGGCACATGATCATTATGCAGCTATCAGTACATTTTTTATACATTCATCTAAGTTGAATATGAGGGTTATGTTTGATAACTTTTTTTGGAGTACCTCTGTCAATTTCAAAGCAGAGAGGTCTTGGATGCTTTGCCTAGTATATGCAGGGATGAACTCAGATGATGATGTTGCGATATATATCAGGAACTCTATCCTTGAGAAGCTAATGAGTTTTTACGTGATAAATAAATCTGTTAAATTGCATAAAATTACCCGTCATCTAGTGAAGCATTGTTCTTTATTTTCATGGTTTTCGTCTCTCATCTCCGTTGCCAGACAGAGGCTTAATGGAAATGAAAATAAACTTTTCTTAAAGCATGTGTTGGTAGCATTGAAGGTAAGTAAGCGCTTGATTCTCATTCGGTTTGTATTTCCTGTTGGATGCAGGAAGGTCCTTTTTGATTTTCCTTTGAAATCCTGCACATTTTTTTTAGCAAGATTGTTCATTGATCATTGTGCTGAAGAGGAGTTAAACCAAACTACTAGATCTCACAGCAATTCACATAACATAGAGAAATTATCAATTCACAATGCACACTCCAAAAGAAAGAGAGATTGTGCCAGGCCCCAGGCCATTTACTCACAATTTCTGAATATCCCCCCTCCCAAATATTCCTTTTTCAATCATAGCTTCAGCTGCAACAGAATCTCCACTTTGCATAACTGCCTCCTCTACCATACTCTCCAAATCCTTAGCCCCATATTGTGTTGA
>Glyma02g29090.1 sequence type=predicted peptide gene model=Glyma02g29090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high NKERYDPVFILRFSIHSLSKAYVAPVEFAGSGLLAIAFVSLSSPDQGIRRLAYGTLDKFKNAVEKCQKRKDVMGLRLLLNSVQNSIEEPWQRIPSVIALFAAEASCVLLDPAHDHYAAISTFFIHSSKLNMRVMFDNFFWSTSVNFKAERSWMLCLVYAGMNSDDDVAIYIRNSILEKLMSFYVINKSVKLHKITRHLVKHCSLFSWFSSLISVARQRLNGNENKLFLKHVLVALKVSKRLILIRFVFPVGCRKVLFDFPLKSCTFFLARLFIDHCAEEELNQTTRSHSNSHNIEKLSIHNAHSKRKRDCARPQAIYSQFLNIPPPKYSFFNHSFSCNRISTLHNCLLYHTLQILSPILC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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