Glyma02g29090 - SoyBase

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Report for Sequence Feature Glyma02g29090

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30490705
stop:	30493296
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g29090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72270	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). \| chr1:27199733-27211122 REVERSE LENGTH=2845	SoyBase	E_val: 2.00E-69	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR13500	Panther	NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1	JGI		ISS
UniRef100_Q7XPP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0053K19.25 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XPP8_ORYSJ	SoyBase	E_val: 1.00E-43	ISS
UniRef100_UPI0002338AFF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338AFF related cluster n=1 Tax=unknown RepID=UPI0002338AFF	SoyBase	E_val: 2.00E-146	ISS

Expression Patterns of Glyma02g29090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g29090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g29090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g29090

Limit To All Plant Sequences

>Glyma02g29090.1   sequence type=CDS   gene model=Glyma02g29090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAAAGAACGTTATGATCCTGTATTTATATTGCGATTTTCAATTCATAGTCTCTCAAAGGCTTATGTAGCGCCTGTGGAGTTTGCTGGTTCAGGGTTGCTTGCGATTGCATTTGTTAGCTTGTCTTCCCCAGACCAAGGGATAAGAAGATTAGCGTATGGCACTCTTGATAAATTTAAGAATGCAGTAGAGAAGTGCCAAAAGAGGAAGGATGTAATGGGACTTCGGCTTCTATTAAATTCTGTTCAAAACAGCATAGAAGAGCCATGGCAAAGAATCCCATCAGTTATTGCTTTATTTGCTGCAGAGGCATCTTGTGTATTGTTAGATCCGGCACATGATCATTATGCAGCTATCAGTACATTTTTTATACATTCATCTAAGTTGAATATGAGGGTTATGTTTGATAACTTTTTTTGGAGTACCTCTGTCAATTTCAAAGCAGAGAGGTCTTGGATGCTTTGCCTAGTATATGCAGGGATGAACTCAGATGATGATGTTGCGATATATATCAGGAACTCTATCCTTGAGAAGCTAATGAGTTTTTACGTGATAAATAAATCTGTTAAATTGCATAAAATTACCCGTCATCTAGTGAAGCATTGTTCTTTATTTTCATGGTTTTCGTCTCTCATCTCCGTTGCCAGACAGAGGCTTAATGGAAATGAAAATAAACTTTTCTTAAAGCATGTGTTGGTAGCATTGAAGGTAAGTAAGCGCTTGATTCTCATTCGGTTTGTATTTCCTGTTGGATGCAGGAAGGTCCTTTTTGATTTTCCTTTGAAATCCTGCACATTTTTTTTAGCAAGATTGTTCATTGATCATTGTGCTGAAGAGGAGTTAAACCAAACTACTAGATCTCACAGCAATTCACATAACATAGAGAAATTATCAATTCACAATGCACACTCCAAAAGAAAGAGAGATTGTGCCAGGCCCCAGGCCATTTACTCACAATTTCTGAATATCCCCCCTCCCAAATATTCCTTTTTCAATCATAGCTTCAGCTGCAACAGAATCTCCACTTTGCATAACTGCCTCCTCTACCATACTCTCCAAATCCTTAGCCCCATATTGTGTTGA

Predicted protein sequences of Glyma02g29090

Limit To All Plant Sequences

>Glyma02g29090.1   sequence type=predicted peptide   gene model=Glyma02g29090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NKERYDPVFILRFSIHSLSKAYVAPVEFAGSGLLAIAFVSLSSPDQGIRRLAYGTLDKFKNAVEKCQKRKDVMGLRLLLNSVQNSIEEPWQRIPSVIALFAAEASCVLLDPAHDHYAAISTFFIHSSKLNMRVMFDNFFWSTSVNFKAERSWMLCLVYAGMNSDDDVAIYIRNSILEKLMSFYVINKSVKLHKITRHLVKHCSLFSWFSSLISVARQRLNGNENKLFLKHVLVALKVSKRLILIRFVFPVGCRKVLFDFPLKSCTFFLARLFIDHCAEEELNQTTRSHSNSHNIEKLSIHNAHSKRKRDCARPQAIYSQFLNIPPPKYSFFNHSFSCNRISTLHNCLLYHTLQILSPILC*

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