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Report for Sequence Feature Glyma02g28910

Feature Type:gene_model
Chromosome:Gm02
Start:30204895
stop:30208468
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g28910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28430AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:10657441-10662404 REVERSE LENGTH=837 SoyBaseE_val: 3.00E-117ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21481Panther UNCHARACTERIZED JGI ISS
PF09758PFAM Uncharacterised conserved protein JGI ISS
UniRef100_G7JTB0UniRef Annotation by Michelle Graham. Most informative UniRef hit: CLEC16A-like protein n=1 Tax=Medicago truncatula RepID=G7JTB0_MEDTR SoyBaseE_val: 3.00E-148ISS
UniRef100_I1MH45UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH45_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g28910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g28910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g171700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g28910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g28910
>Glyma02g28910.2   sequence type=CDS   gene model=Glyma02g28910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTTAACTGATCAATTGGCGAAAGTTGAAATAGTAAACGAGGCTAATAAGGATTTTGTTATCGAGGCACTGAGATCTATTACGAAATTCTTCATGGAAATGCAAGTTGTGGTAAAGTTTGTACGTGTTCTTAAACTTGGCAGAACCAACCTAAGAAGTAAACACGCTATATATTATATGTTTAGTAATGAGCATATGAACTACCTAATTACATATACATTTGACTTTTTCAACGAAGAGATATTATCATACTACATATCCTTTTTAAGAGCAATAAGTGGAAAATTTAACAAGAATAGAATTTCTCTACGTATGAAGACTCGCAATGAGGAAGTAGTTTCATTTCCACTATATGTTAAAGCAAGACGCTTTGCCTTTCATAAGGAGAACATGATTCTCACTATTGTATGTGTTGTGACCCTTACTATTTATCATTTTGGGGATGAATGTGTCAACATGTATATAACCAGTGTACCTCACACCGATTACTTCTCAAACCTGGTTTCATTTTTTAAGAATCAATGTATGGATTTAAATAGACTGATCTCTGAGACACTCAAAAATTTGATGTTATCTCTGTTGGAATTCCTGATAGAGAAATTACTTCAAATTATTGTTGTTCTAGATGAAATTAAGGATAACCTATATTACTTTAGCGATGTTATCTCTGTTGGAATTCCTGATGTTGGGAGGGTAATAACAGACAACAATTTGATGCTTCTGATTTTTCCAATACTTCTTCATTCCTTGAGAGTAGTGGATGCTAATGTATGGAACTTCTCTTTATGTCTTTCAATTGTGTTCTTACTAATGTTCTCTCTACTTTGTTGCAACTTAAGGATAGTCAAGATCAAAGATTTGACAAATTCCATAGTCGTTGCTCTTTTTTATCCTTTAGATACCTTTACAATATTTTCTAGGGGTAAAGTCAATTGCTATATCTCTGATCGTGGTCTTACGTTCATAAGCCAAGAACCAGAAGATGATAATATTGCCAAGTGCAATGCAGGATGCTTGACATTGAATGTGCCAAACTCTTCTAGTTCTTCAGGTTTAGACCCAAAAAGTGTTATGTCAAAAGATAATTGTAGCAGTTCAAATTTGGCTATAAGACTTTTGCTAACAATTATGATAAATTTTTTGCCATCATGGGATGATGCACAAGTTTGGGGTTCTTTGAGTGTTCTTGCCACTTTACTACAAACTAAAGAACTTGATGAATCAATGCCAGATAGGCTTGGAATTCTTCCACAATGCAAACAGCACAAGAAACAATTATTGGACTTTATCCTGACTAGCATTTTTACGATTACTGTTGAATTTACCTTCAAGAGCCATTATTAA
Predicted protein sequences of Glyma02g28910
>Glyma02g28910.2   sequence type=predicted peptide   gene model=Glyma02g28910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YLTDQLAKVEIVNEANKDFVIEALRSITKFFMEMQVVVKFVRVLKLGRTNLRSKHAIYYMFSNEHMNYLITYTFDFFNEEILSYYISFLRAISGKFNKNRISLRMKTRNEEVVSFPLYVKARRFAFHKENMILTIVCVVTLTIYHFGDECVNMYITSVPHTDYFSNLVSFFKNQCMDLNRLISETLKNLMLSLLEFLIEKLLQIIVVLDEIKDNLYYFSDVISVGIPDVGRVITDNNLMLLIFPILLHSLRVVDANVWNFSLCLSIVFLLMFSLLCCNLRIVKIKDLTNSIVVALFYPLDTFTIFSRGKVNCYISDRGLTFISQEPEDDNIAKCNAGCLTLNVPNSSSSSGLDPKSVMSKDNCSSSNLAIRLLLTIMINFLPSWDDAQVWGSLSVLATLLQTKELDESMPDRLGILPQCKQHKKQLLDFILTSIFTITVEFTFKSHY*






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