SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06720 | AT | Annotation by Michelle Graham. TAIR10: peroxidase 2 | chr5:2077567-2078857 REVERSE LENGTH=335 | SoyBase | E_val: 3.00E-173 | ISS |
| GO:0002215 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to nematode | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0004601 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxidase activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| PF00141 | PFAM | Peroxidase | JGI | ISS | |
| UniRef100_I1JG01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JG01_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9XFL6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase 5 n=1 Tax=Phaseolus vulgaris RepID=Q9XFL6_PHAVU | SoyBase | E_val: 0 | ISS |
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Glyma02g28880 not represented in the dataset |
Glyma02g28880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g16810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g171600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g28880.1 sequence type=CDS gene model=Glyma02g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCTACTAATACTTATTCCCTTCCGACCACCATTTTCTTAGTGCTAACCTTTCTCTTCCCTTCAGAAGCTCAATTGAATGCAACCTTCTATTCTAGCACATGCCCCAATGTGTCTTCTATCGTGAGCAATGCTGTTCAGCAGGCTCTGCAATCTGATTCCCGAATTGGTGCAAGCCTCATTCGCCTCCACTTTCATGATTGTTTTGTCAATGGGTGTGATGCGTCCATATTGTTAGACCAGGGTGGTAACATCACACAAAGTGAGAAAAATGCAGTTCCTAACTTCAATTCCGTTCGGGGCTTTGATATTGTTGATAACATCAAGAGCTCCCTCGAAAGCTCTTGCCCTGGAGTCGTATCTTGTGCTGATATTCTTGCACTTGCAGCAGAATCTTCTGTGTCCTTGTCAGGAGGTCCTTCATGGAACGTACTACTCGGAAGAAGGGATGGTCTAACTGCAAACCAAGCTGGTGCCAATAGCTCCCTTCCTTCTCCATTTGAGAGCCTAGCCAATGTCTCATCCAAATTCTCTGCGGTTGGCCTAGACACAACCGATCTTGTTGCATTATCTGGTGCACACACTTTTGGTCGTTCCCAATGTCAATTTTTCTCCCAAAGGTTGTTCAACTTCAGCGGCACAGGAAGTCCTGATCCAACCCTAAACTCAACCTATTTGGCCACTCTGCAGCAAAATTGTCCCCAAAACGGAAATGGGTCTACATTGAACAATCTTGATCCTTCAACCCCTGACACTTTTGACAACAACTATTTCACCAATCTTCTCATCAACCAAGGTCTTCTTCAAACAGATCAAGAACTCTTCTCTACGAATGGCTCTTCCACAATCTCCATTGTTAACAACTTTGCCAACAACCAATCAGCCTTCTTCGCAGCATTTGCTCAGTCGATGATCAACATGGGTAACATCAGCCCTTTGACTGGAACTCAAGGAGAAATCAGAACAGATTGTAAGAAAGTGAATGGAAGTTAA
>Glyma02g28880.1 sequence type=predicted peptide gene model=Glyma02g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSTNTYSLPTTIFLVLTFLFPSEAQLNATFYSSTCPNVSSIVSNAVQQALQSDSRIGASLIRLHFHDCFVNGCDASILLDQGGNITQSEKNAVPNFNSVRGFDIVDNIKSSLESSCPGVVSCADILALAAESSVSLSGGPSWNVLLGRRDGLTANQAGANSSLPSPFESLANVSSKFSAVGLDTTDLVALSGAHTFGRSQCQFFSQRLFNFSGTGSPDPTLNSTYLATLQQNCPQNGNGSTLNNLDPSTPDTFDNNYFTNLLINQGLLQTDQELFSTNGSSTISIVNNFANNQSAFFAAFAQSMINMGNISPLTGTQGEIRTDCKKVNGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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