Glyma02g28860 - SoyBase

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Report for Sequence Feature Glyma02g28860

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30093585
stop:	30096277
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g28860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06710	AT	Annotation by Michelle Graham. TAIR10: homeobox from Arabidopsis thaliana \| chr5:2068305-2070284 REVERSE LENGTH=336	SoyBase	E_val: 4.00E-87	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0483	KOG	Transcription factor HEX, contains HOX and HALZ domains	JGI		ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF218	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF02183	PFAM	Homeobox associated leucine zipper	JGI		ISS
UniRef100_G7KVF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper protein HOX27 n=1 Tax=Medicago truncatula RepID=G7KVF5_MEDTR	SoyBase	E_val: 1.00E-115	ISS
UniRef100_UPI000189DA3A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189DA3A related cluster n=1 Tax=unknown RepID=UPI000189DA3A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g28860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g28860

Paralog	Evidence	Comments
Glyma09g16790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g28860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g171300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g28860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g28860

Limit To All Plant Sequences

>Glyma02g28860.1   sequence type=CDS   gene model=Glyma02g28860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTGGCTTTGAGTTTGGGAGACACGTCCAAGTCTTTTACCTTTCTCGACAAGGCCGCGGTGAATTTACCCACCAACAAGGACCCACCTGGGTTGTTCAGCTTGGCGCCGAGTTTCGCCGCCACCGCCGCCGCCGCCGATAAAAGAAGCGATGCTGCTGAGAGGAGGGGTTTTTCTTCAGATCCACCGGTTCAGCTCGACCTTCTTCCTTTCTCTCCGGTTCTCAGACCCCAACAACAACCTCCCTCTCAACTTCGGATCCCTTGGCTCACCGAAGCATGCGGGGCGGCGAGGGTGCTAGACGTGAACCTATTCCGGGCGGCGACCGCGGAGGATGGCGACGACGGCACGTCGTTGTCGTCGTCGCCAAACAGCGCGGTGTCGCCGTTTCAGATGGATTTCTGCACCAGGAACTGTAATGCAGAGTTCGGAGGCAGAAACAAGAGAGAGCAGCAAGAGGCTGAGGGTAGAGCGAGTGATGACGATGAAAATGGCTCCACGAGGAAGAAACTCAGGCTCTCTAAGGAACAATCAGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCTTTGGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACCCTAACGGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTCAGAGCCCTAAAAACTTCACAACCTTTCTACATGCAACTTCCAGCCACCACACTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACAACTAACCAAACTACCACCGTTAACAACAATGCTTCTCAAATCCCAGTGGAATTGTCTCTCAGCAAGCCCAGAATATTGCCCTTCCCCAATGGACAGGCCCAAGCTCATCAAATAGCTTCTTCATGA

Predicted protein sequences of Glyma02g28860

Limit To All Plant Sequences

>Glyma02g28860.1   sequence type=predicted peptide   gene model=Glyma02g28860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELALSLGDTSKSFTFLDKAAVNLPTNKDPPGLFSLAPSFAATAAAADKRSDAAERRGFSSDPPVQLDLLPFSPVLRPQQQPPSQLRIPWLTEACGAARVLDVNLFRAATAEDGDDGTSLSSSPNSAVSPFQMDFCTRNCNAEFGGRNKREQQEAEGRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTTTVNNNASQIPVELSLSKPRILPFPNGQAQAHQIASS*

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