Glyma02g28845 - SoyBase

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Report for Sequence Feature Glyma02g28845

Feature Type:	gene_model
Chromosome:	Gm02
Start:	30052899
stop:	30058524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g28845

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06700	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) \| chr5:2063638-2065810 FORWARD LENGTH=608	SoyBase	E_val: 0	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0045489	GO-bp	Annotation by Michelle Graham. GO Biological Process: pectin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_Q9FG35	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB82953.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FG35_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336BB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336BB8 related cluster n=1 Tax=unknown RepID=UPI0002336BB8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g28845

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g28845 not represented in the dataset	Glyma02g28845 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g28845

Paralog	Evidence	Comments
Glyma09g16780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g28845 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g171200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g28845

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g28845

Limit To All Plant Sequences

>Glyma02g28845.2   sequence type=transcript   gene model=Glyma02g28845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAACCAAAAATCTTCCTTTCCTCTGTTGTCTTTTCGATTCACCACCGGCCAAACCAAACAGTCACAACACCACTATCTCTTCCTTCATTTCACACTTTGTAAGTTGAAGTACCCCTGTTTCCAACATCTTTATAATAAGTCCACATGTTCTTCCTTTCTCTCTCTCTCTCTCTCATCTAAAATAGGGACTCAAACTTAAAAAACAAAACCAAACCTTTCACCCTCATGTAATGGCTGATTCCACCAAGTACATTCCCATAGGTGGCACAGGCACAACCCTCAACTCACACCTCAACACCCTCTTCCCCATTCTCAAAGCCAGAAAAACACTCACTGTTGCTTATTGCTTCACCTTTGCCTTTGTTGCTCTCACTGTTTTCCTTGCGTTTTGCCCCTCTCCAAACACCTCCTCTCCCTTCTTCACCAGCATATTCTCCTCCACTGCCACCACCGCTTCCTCTGCCAGCTCCTACAAGTCCCAACTCTCTTCCATTTTCTCTTTCTTCTTCCCCAACACCACAATTTCATCAAGTGCTACTCTTCACACCGACACCACTAGATCTAGCAATAGCACTTCTCAATCTCCTCAAACAAGTAAAAAGACATTCAAAACCACCCCTTTTGAAAACCAAACTCAAACTACTCCTCCAACCAGAAGCAAGATACCAAGTGATCATCACACTGCAAAACCACCTGATCATGTTGTAAATAAGGAACCATCGAGTGGTAACAATCATACCCAAGTTTCTGATGAGGATAAAGCTGTAAAGAAGACAAATCAATCTTCTAATGGTGTTGGGCATAGTCCGAATAAGAATTTGAGTTCTTTGGTGAATGGAGGGGGCACAGAGAAGGGTGTTGGGCATAGTAATTACACGGTTTCTTGGTCGAAGAAGCAGAAGAATGGGAGCAATGAAACGGATTCAAGGGTGAAGGATGAATTCATGGAGTCTTTGATCAAGTGTGAATTTTTTGATGGGGAATGGATCAAGGAGGATTCATATCCTCTCTATGAACCTGGTTCTTGCAATATTATCGATGAACAATTCAATTGTATCCAAAATGGAAGGCCTGATAAAGCCTTTCAGAAATATAAGTGGAAGCCAAAGGGGTGCAGCCTCCCAAGGTTGGATGGACATCGAATGCTGGATATGTTGAGAGGCAAGAGGCTTATCTTTGTTGGTGATTCCATCAATAGGAATATGTGGGAATCTCTAATTTGCATCCTGAGAAACGCTGTGAAAGACAAAAGCAAAGTTTATGAAGCAAATGGAAGAGTCCATTTCAGAGGAGAAGCCTCTTATTCATTCATATTCAAAGATTATAACTTCTCCGTGGAGCTTTTCGTATCCCCTTTCTTAGTTCAGGAATGGGAAGTTCAAGTCAAGAATGGAACAAAGAAGGAAACACTTCGTCTTGATTTAGTTGGTAAATCTTCAGTTCAATATAAAAATGCGGATATAATCATCTTCAACACTGGCCACTGGTGGACTCATGATAAAACTTCTAAAGGGAAGGACTATTACCAAGAGGGTAGCCATGTCTATGATGAACTGAATGTTTTGGAGGCATTTCGAAGGGCTATAACAACTTGGAGTAGATGGATTGATGCCAACATAAATCAATCGAAGTCTATGGTATTCTTCAGAGGCTATTCTGCTTCACATTTCAGTGGGGGACAATGGAATTCTGGTGGACAATGTGACAGTGAAACCGTGCCTATCAAGAATGAGAAGTACTTGAGGGAATACCCCCCTAAGATGAGGGTATTGGAAAAGGTTTTGAAGAACATGAAAGCCCATGTCACCTACCTAAATGTCACTAAAATGACAGATTTCAGAAAGGATGGTCATCCCTCGATATATAGGAAGCAAAACCTATCACCAGAAGAGAGGAAATCTCCATTGAGGTACCAAGACTGCAGCCACTGGTGCCTCCCTGGTGTTCCAGATGCATGGAATGAGATTCTTTATGCCGAACTTCTGTTGAAACAGTATCAGAATCAGCAGAAGAGACCATAGGTAAACAACAAGTCATTTATTTAGTTATATTCAATGAGTTTAGCTGAAAGCAAGAACTAGATGCAGTTATTATGTATACCATTTTTTTCCCTTCCATATAAGGATATGGAGAGGAACAAACCATACAGGACAAGTTTTTCTAATTTTGTAAAGATTCAAAAGGTTATGTTTAGTGAAACAATATATAAGAGAAGTTCCTTGATGAGACATTAATTTTTACATTCT

Coding sequences of Glyma02g28845

Limit To All Plant Sequences

>Glyma02g28845.1   sequence type=CDS   gene model=Glyma02g28845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCCACCAAGTACATTCCCATAGGTGGCACAGGCACAACCCTCAACTCACACCTCAACACCCTCTTCCCCATTCTCAAAGCCAGAAAAACACTCACTGTTGCTTATTGCTTCACCTTTGCCTTTGTTGCTCTCACTGTTTTCCTTGCGTTTTGCCCCTCTCCAAACACCTCCTCTCCCTTCTTCACCAGCATATTCTCCTCCACTGCCACCACCGCTTCCTCTGCCAGCTCCTACAAGTCCCAACTCTCTTCCATTTTCTCTTTCTTCTTCCCCAACACCACAATTTCATCAAGTGCTACTCTTCACACCGACACCACTAGATCTAGCAATAGCACTTCTCAATCTCCTCAAACAAGTAAAAAGACATTCAAAACCACCCCTTTTGAAAACCAAACTCAAACTACTCCTCCAACCAGAAGCAAGATACCAAGTGATCATCACACTGCAAAACCACCTGATCATGTTGTAAATAAGGAACCATCGAGTGGTAACAATCATACCCAAGTTTCTGATGAGGATAAAGCTGTAAAGAAGACAAATCAATCTTCTAATGGTGTTGGGCATAGTCCGAATAAGAATTTGAGTTCTTTGGTGAATGGAGGGGGCACAGAGAAGGGTGTTGGGCATAGTAATTACACGGTTTCTTGGTCGAAGAAGCAGAAGAATGGGAGCAATGAAACGGATTCAAGGGTGAAGGATGAATTCATGGAGTCTTTGATCAAGTGTGAATTTTTTGATGGGGAATGGATCAAGGAGGATTCATATCCTCTCTATGAACCTGGTTCTTGCAATATTATCGATGAACAATTCAATTGTATCCAAAATGGAAGGCCTGATAAAGCCTTTCAGAAATATAAGTGGAAGCCAAAGGGGTGCAGCCTCCCAAGGTTGGATGGACATCGAATGCTGGATATGTTGAGAGGCAAGAGGCTTATCTTTGTTGGTGATTCCATCAATAGGAATATGTGGGAATCTCTAATTTGCATCCTGAGAAACGCTGTGAAAGACAAAAGCAAAGTTTATGAAGCAAATGGAAGAGTCCATTTCAGAGGAGAAGCCTCTTATTCATTCATATTCAAAGATTATAACTTCTCCGTGGAGCTTTTCGTATCCCCTTTCTTAGTTCAGGAATGGGAAGTTCAAGTCAAGAATGGAACAAAGAAGGAAACACTTCGTCTTGATTTAGTTGGTAAATCTTCAGTTCAATATAAAAATGCGGATATAATCATCTTCAACACTGGCCACTGGTGGACTCATGATAAAACTTCTAAAGGGAAGGACTATTACCAAGAGGGTAGCCATGTCTATGATGAACTGAATGTTTTGGAGGCATTTCGAAGGGCTATAACAACTTGGAGTAGATGGATTGATGCCAACATAAATCAATCGAAGTCTATGGTATTCTTCAGAGGCTATTCTGCTTCACATTTCAGTGGGGGACAATGGAATTCTGGTGGACAATGTGACAGTGAAACCGTGCCTATCAAGAATGAGAAGTACTTGAGGGAATACCCCCCTAAGATGAGGGTATTGGAAAAGGTTTTGAAGAACATGAAAGCCCATGTCACCTACCTAAATGTCACTAAAATGACAGATTTCAGAAAGGATGGTCATCCCTCGATATATAGGAAGCAAAACCTATCACCAGAAGAGAGGAAATCTCCATTGAGGTACCAAGACTGCAGCCACTGGTGCCTCCCTGGTGTTCCAGATGCATGGAATGAGATTCTTTATGCCGAACTTCTGTTGAAACAGTATCAGAATCAGCAGAAGAGACCATAG

>Glyma02g28845.2   sequence type=CDS   gene model=Glyma02g28845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCCACCAAGTACATTCCCATAGGTGGCACAGGCACAACCCTCAACTCACACCTCAACACCCTCTTCCCCATTCTCAAAGCCAGAAAAACACTCACTGTTGCTTATTGCTTCACCTTTGCCTTTGTTGCTCTCACTGTTTTCCTTGCGTTTTGCCCCTCTCCAAACACCTCCTCTCCCTTCTTCACCAGCATATTCTCCTCCACTGCCACCACCGCTTCCTCTGCCAGCTCCTACAAGTCCCAACTCTCTTCCATTTTCTCTTTCTTCTTCCCCAACACCACAATTTCATCAAGTGCTACTCTTCACACCGACACCACTAGATCTAGCAATAGCACTTCTCAATCTCCTCAAACAAGTAAAAAGACATTCAAAACCACCCCTTTTGAAAACCAAACTCAAACTACTCCTCCAACCAGAAGCAAGATACCAAGTGATCATCACACTGCAAAACCACCTGATCATGTTGTAAATAAGGAACCATCGAGTGGTAACAATCATACCCAAGTTTCTGATGAGGATAAAGCTGTAAAGAAGACAAATCAATCTTCTAATGGTGTTGGGCATAGTCCGAATAAGAATTTGAGTTCTTTGGTGAATGGAGGGGGCACAGAGAAGGGTGTTGGGCATAGTAATTACACGGTTTCTTGGTCGAAGAAGCAGAAGAATGGGAGCAATGAAACGGATTCAAGGGTGAAGGATGAATTCATGGAGTCTTTGATCAAGTGTGAATTTTTTGATGGGGAATGGATCAAGGAGGATTCATATCCTCTCTATGAACCTGGTTCTTGCAATATTATCGATGAACAATTCAATTGTATCCAAAATGGAAGGCCTGATAAAGCCTTTCAGAAATATAAGTGGAAGCCAAAGGGGTGCAGCCTCCCAAGGTTGGATGGACATCGAATGCTGGATATGTTGAGAGGCAAGAGGCTTATCTTTGTTGGTGATTCCATCAATAGGAATATGTGGGAATCTCTAATTTGCATCCTGAGAAACGCTGTGAAAGACAAAAGCAAAGTTTATGAAGCAAATGGAAGAGTCCATTTCAGAGGAGAAGCCTCTTATTCATTCATATTCAAAGATTATAACTTCTCCGTGGAGCTTTTCGTATCCCCTTTCTTAGTTCAGGAATGGGAAGTTCAAGTCAAGAATGGAACAAAGAAGGAAACACTTCGTCTTGATTTAGTTGGTAAATCTTCAGTTCAATATAAAAATGCGGATATAATCATCTTCAACACTGGCCACTGGTGGACTCATGATAAAACTTCTAAAGGGAAGGACTATTACCAAGAGGGTAGCCATGTCTATGATGAACTGAATGTTTTGGAGGCATTTCGAAGGGCTATAACAACTTGGAGTAGATGGATTGATGCCAACATAAATCAATCGAAGTCTATGGTATTCTTCAGAGGCTATTCTGCTTCACATTTCAGTGGGGGACAATGGAATTCTGGTGGACAATGTGACAGTGAAACCGTGCCTATCAAGAATGAGAAGTACTTGAGGGAATACCCCCCTAAGATGAGGGTATTGGAAAAGGTTTTGAAGAACATGAAAGCCCATGTCACCTACCTAAATGTCACTAAAATGACAGATTTCAGAAAGGATGGTCATCCCTCGATATATAGGAAGCAAAACCTATCACCAGAAGAGAGGAAATCTCCATTGAGGTACCAAGACTGCAGCCACTGGTGCCTCCCTGGTGTTCCAGATGCATGGAATGAGATTCTTTATGCCGAACTTCTGTTGAAACAGTATCAGAATCAGCAGAAGAGACCATAG

Predicted protein sequences of Glyma02g28845

Limit To All Plant Sequences

>Glyma02g28845.1   sequence type=predicted peptide   gene model=Glyma02g28845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSTKYIPIGGTGTTLNSHLNTLFPILKARKTLTVAYCFTFAFVALTVFLAFCPSPNTSSPFFTSIFSSTATTASSASSYKSQLSSIFSFFFPNTTISSSATLHTDTTRSSNSTSQSPQTSKKTFKTTPFENQTQTTPPTRSKIPSDHHTAKPPDHVVNKEPSSGNNHTQVSDEDKAVKKTNQSSNGVGHSPNKNLSSLVNGGGTEKGVGHSNYTVSWSKKQKNGSNETDSRVKDEFMESLIKCEFFDGEWIKEDSYPLYEPGSCNIIDEQFNCIQNGRPDKAFQKYKWKPKGCSLPRLDGHRMLDMLRGKRLIFVGDSINRNMWESLICILRNAVKDKSKVYEANGRVHFRGEASYSFIFKDYNFSVELFVSPFLVQEWEVQVKNGTKKETLRLDLVGKSSVQYKNADIIIFNTGHWWTHDKTSKGKDYYQEGSHVYDELNVLEAFRRAITTWSRWIDANINQSKSMVFFRGYSASHFSGGQWNSGGQCDSETVPIKNEKYLREYPPKMRVLEKVLKNMKAHVTYLNVTKMTDFRKDGHPSIYRKQNLSPEERKSPLRYQDCSHWCLPGVPDAWNEILYAELLLKQYQNQQKRP*

>Glyma02g28845.2   sequence type=predicted peptide   gene model=Glyma02g28845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSTKYIPIGGTGTTLNSHLNTLFPILKARKTLTVAYCFTFAFVALTVFLAFCPSPNTSSPFFTSIFSSTATTASSASSYKSQLSSIFSFFFPNTTISSSATLHTDTTRSSNSTSQSPQTSKKTFKTTPFENQTQTTPPTRSKIPSDHHTAKPPDHVVNKEPSSGNNHTQVSDEDKAVKKTNQSSNGVGHSPNKNLSSLVNGGGTEKGVGHSNYTVSWSKKQKNGSNETDSRVKDEFMESLIKCEFFDGEWIKEDSYPLYEPGSCNIIDEQFNCIQNGRPDKAFQKYKWKPKGCSLPRLDGHRMLDMLRGKRLIFVGDSINRNMWESLICILRNAVKDKSKVYEANGRVHFRGEASYSFIFKDYNFSVELFVSPFLVQEWEVQVKNGTKKETLRLDLVGKSSVQYKNADIIIFNTGHWWTHDKTSKGKDYYQEGSHVYDELNVLEAFRRAITTWSRWIDANINQSKSMVFFRGYSASHFSGGQWNSGGQCDSETVPIKNEKYLREYPPKMRVLEKVLKNMKAHVTYLNVTKMTDFRKDGHPSIYRKQNLSPEERKSPLRYQDCSHWCLPGVPDAWNEILYAELLLKQYQNQQKRP*

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