Glyma02g28830 - SoyBase

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Report for Sequence Feature Glyma02g28830

Feature Type:	gene_model
Chromosome:	Gm02
Start:	29996078
stop:	29999180
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g28830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12050	AT	Annotation by Michelle Graham. TAIR10: Aha1 domain-containing protein \| chr3:3839289-3841303 FORWARD LENGTH=360	SoyBase	E_val: 2.00E-166	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0001671	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activator activity	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
KOG2936	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13009	Panther	HEAT SHOCK PROTEIN 90 (HSP90) CO-CHAPERONE AHA-1	JGI		ISS
PF08327	PFAM	Activator of Hsp90 ATPase homolog 1-like protein	JGI		ISS
PF09229	PFAM	Activator of Hsp90 ATPase, N-terminal	JGI		ISS
UniRef100_D7KZN7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aha1 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KZN7_ARALL	SoyBase	E_val: 1.00E-164	ISS
UniRef100_I1JFZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFZ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g28830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g28830

Paralog	Evidence	Comments
Glyma09g16673	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g28830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g171100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g28830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g28830

Limit To All Plant Sequences

>Glyma02g28830.2   sequence type=transcript   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTGGCCTGCAACGGTAAGTTACTGTATCCAACGAAACTCCCAACTTGTTTCCCCTGTCTTCTAGATCCTTCCCTCGGTCCACCCCGAAACCACTTTCACGTTTCCCTTTTATTTTTTTGTTTTCCCACTTCGCTGGAATTTCCCATATATAGTCACATTGATTCTGGAACCTTCTAAACTCTCCATACCCATCCTCAACTACCATTATTATTGCCACCCCCACTCGCGAGTGTATTGGATTGAGATCTTAAAAGAATATTTTGGCAGAAAAAACTCCCGCGTGGATCTTTGCTCATTTGAAATTCGATGGCGAAGTTCGGCGAGGGTGACAAGCGGTGGATCGTGGCTGAGCGCCCCGACGGCACCAACGTGCACAACTGGCACTGGGCCGAGACCAACTGCCTCGAGTGGTCCAGAACCTTTTTCAACAACAGTTTCACCAACGTCGCCGTCGGTGACGGCGATGCCACTGTCACGATCAAGAAGGTGGAGAAGCTCGACGGCGAGGCCTATGTCAACGTCCGCAAGGGGAAGGTGATCCCCGGGTACGAGATCAGCGTGAGGCTCGCTTGGGAGGGCGAGGCGCGTGACGCCGACGGAAAGGTTCTGAAGAGAGTCGACGGCGCCGTCGAGATCCCGTACATCTCTGACGAGAACGCCGGCGAGGATCCGGAAATTAGGGTTTCGGTGAAGGAAAATGGCGAACTTGGGATTAAATTGATGGAGGTGATGTTGAAGAAGGGGAAGGTGGTGGTTTTGGAGAAGGTTAGGGTTTGGGTGGAGAGCATGGCGAAGGGTGGGCCCGTGAAGGACGAGCTCGAAGCGAAGAAGGTGGCTGTTCCTCACAAGAACAACAACAACAATAACAACAATAGTAGTAATGGTGATAACAATGTTAAGAAGGAAGAGGTTAAGAAGAATGAGGGGAAGAAGGGGTTTAAGGTGATTAGTTTGATTGAGAAGTTTAATTGTAGGGCCAGGGATTTGTTTGAGATTCTGATGGATGAGAATAGATGGAGGGGGTTTACGCAGAGCAATGCAAGGATAAGCAAGGAGGTTGGAGGAGAGTTTAGTATTTTTGATGGGTCGGTGACCGGGAAGAATTTGGAGTTGGATGAAGGGAAGCTGATTGTGCAGGGATGGAGGTTTGGGAGCTGGCCGGATGGGATTGAATCCATGGTGAGGATTGTGTTTGAGGAGCCTGAAGATGGAGTCACTGTTGTTAAGCTCACACATAGTGATGTCCCTGAAGAAGACAGATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCGTTTGGTTTTGGAATTTGAGCTTTTCCTCATACTATTTATGTGTTGTACAATTTTATTTTTTCTTAAGGAATTTTGTTTTCTTTTCAGCAAGGAAAGATTATTGGATTGGCAATTTCTTGTGAAAGACGAAGTGTCTCATGCTCAATTTAATGATCTTGCTGGCTGTATCTCTAGTTAGAAATGTGATCTGTCATCATTTATCAATGTGATCTCATTGTCCATGTCATACTGAAAGGGTTACAAATTCAGTTGGAGCTAAATTGCTCCCATTCCCATGTTTACTAAATGAAGACTGTGATTACGAATTTCCAGCGCATAGTGATTTTAGTTACGTTGAAATTGGATATTCAAATGGGTCTTGAGGGTAACTGCCGTGAACCACCGACTGTGTTATAAAAATTGGTTCGGACCGGCCAATCTGATCGGGATCCTGTCTCCTTACTGGTCTGGATTAGCTTTCACATTGGTTGTGCATCCAAACCAACCAAATTAACCTGATCGGTTTTGGTTTTGCTTAAACCTAGGTGACCTAT

>Glyma02g28830.3   sequence type=transcript   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGTTCGGCGAGGGTGACAAGCGGTGGATCGTGGCTGAGCGCCCCGACGGCACCAACGTGCACAACTGGCACTGGGCCGAGACCAACTGCCTCGAGTGGTCCAGAACCTTTTTCAACAACAGTTTCACCAACGTCGCCGTCGGTGACGGCGATGCCACTGTCACGATCAAGAAGGTGGAGAAGCTCGACGGCGAGGCCTATGTCAACGTCCGCAAGGGGAAGGTGATCCCCGGGTACGAGATCAGCGTGAGGCTCGCTTGGGAGGGCGAGGCGCGTGACGCCGACGGAAAGGTTCTGAAGAGAGTCGACGGCGCCGTCGAGATCCCGTACATCTCTGACGAGAACGCCGGCGAGGATCCGGAAATTAGGGTTTCGGTGAAGGAAAATGGCGAACTTGGGATTAAATTGATGGAGGTGATGTTGAAGAAGGGGAAGGTGGTGGTTTTGGAGAAGGTTAGGGTTTGGGTGGAGAGCATGGCGAAGGGTGGGCCCGTGAAGGACGAGCTCGAAGCGAAGAAGGTGGCTGTTCCTCACAAGAACAACAACAACAATAACAACAATAGTAGTAATGGTGATAACAATGTTAAGAAGGAAGAGGTTAAGAAGAATGAGGGGAAGAAGGGGTTTAAGGTGATTAGTTTGATTGAGAAGTTTAATTGTAGGGCCAGGGATTTGTTTGAGATTCTGATGGATGAGAATAGATGGAGGGGGTTTACGCAGAGCAATGCAAGGATAAGCAAGGAGGTTGGAGGAGAGTTTAGTATTTTTGATGGGTCGGTGACCGGGAAGAATTTGGAGTTGGATGAAGGGAAGCTGATTGTGCAGGGATGGAGGTTTGGGAGCTGGCCGGATGGGATTGAATCCATGGTGAGGATTGTGTTTGAGGAGCCTGAAGATGGAGTCACTGTTGTTAAGCTCACACATAGTGATGTCCCTGAAGAAGACAGATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCGTTTGCAAGGAAAGATTATTGGATTGGCAATTTCTTGTGAAAGACGAAGTGTCTCATGCTCAATTTAATGATCTTGCTGGCTGTATCTCTAGTTAGAAATGTGATCTGTCATCATTTATCAATGTGATCTCATTGTCCATGTCATACTGAAAGGGTTACAAATTCAGTTGGAGCTAAATTGCTCCCATTCCCATGTTTACTAAATGAAGACTGTGATTA

Coding sequences of Glyma02g28830

Limit To All Plant Sequences

>Glyma02g28830.1   sequence type=CDS   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGTTCGGCGAGGGTGACAAGCGGTGGATCGTGGCTGAGCGCCCCGACGGCACCAACGTGCACAACTGGCACTGGGCCGAGACCAACTGCCTCGAGTGGTCCAGAACCTTTTTCAACAACAGTTTCACCAACGTCGCCGTCGGTGACGGCGATGCCACTGTCACGATCAAGAAGGTGGAGAAGCTCGACGGCGAGGCCTATGTCAACGTCCGCAAGGGGAAGGTGATCCCCGGGTACGAGATCAGCGTGAGGCTCGCTTGGGAGGGCGAGGCGCGTGACGCCGACGGAAAGGTTCTGAAGAGAGTCGACGGCGCCGTCGAGATCCCGTACATCTCTGACGAGAACGCCGGCGAGGATCCGGAAATTAGGGTTTCGGTGAAGGAAAATGGCGAACTTGGGATTAAATTGATGGAGGTGATGTTGAAGAAGGGGAAGGTGGTGGTTTTGGAGAAGGTTAGGGTTTGGGTGGAGAGCATGGCGAAGGGTGGGCCCGTGAAGGACGAGCTCGAAGCGAAGAAGGTGGCTGTTCCTCACAAGAACAACAACAACAATAACAACAATAGTAGTAATGGTGATAACAATGTTAAGAAGGAAGAGGTTAAGAAGAATGAGGGGAAGAAGGGGTTTAAGGTGATTAGTTTGATTGAGAAGTTTAATTGTAGGGCCAGGGATTTGTTTGAGATTCTGATGGATGAGAATAGATGGAGGGGGTTTACGCAGAGCAATGCAAGGATAAGCAAGGAGGTTGGAGGAGAGTTTAGTATTTTTGATGGGTCGGTGACCGGGAAGAATTTGGAGTTGGATGAAGGGAAGCTGATTGTGCAGGGATGGAGGTTTGGGAGCTGGCCGGATGGGATTGAATCCATGGTGAGGATTGTGTTTGAGGAGCCTGAAGATGGAGTCACTGTTGTTAAGCTCACACATAGTGATGTCCCTGAAGAAGACAGATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCCAAGGAAAGATTATTGGATTGGCAATTTCTTGTGAAAGACGAAGTGTCTCATGCTCAATTTAATGATCTTGCTGGCTGTATCTCTAGTTAG

>Glyma02g28830.2   sequence type=CDS   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGTTCGGCGAGGGTGACAAGCGGTGGATCGTGGCTGAGCGCCCCGACGGCACCAACGTGCACAACTGGCACTGGGCCGAGACCAACTGCCTCGAGTGGTCCAGAACCTTTTTCAACAACAGTTTCACCAACGTCGCCGTCGGTGACGGCGATGCCACTGTCACGATCAAGAAGGTGGAGAAGCTCGACGGCGAGGCCTATGTCAACGTCCGCAAGGGGAAGGTGATCCCCGGGTACGAGATCAGCGTGAGGCTCGCTTGGGAGGGCGAGGCGCGTGACGCCGACGGAAAGGTTCTGAAGAGAGTCGACGGCGCCGTCGAGATCCCGTACATCTCTGACGAGAACGCCGGCGAGGATCCGGAAATTAGGGTTTCGGTGAAGGAAAATGGCGAACTTGGGATTAAATTGATGGAGGTGATGTTGAAGAAGGGGAAGGTGGTGGTTTTGGAGAAGGTTAGGGTTTGGGTGGAGAGCATGGCGAAGGGTGGGCCCGTGAAGGACGAGCTCGAAGCGAAGAAGGTGGCTGTTCCTCACAAGAACAACAACAACAATAACAACAATAGTAGTAATGGTGATAACAATGTTAAGAAGGAAGAGGTTAAGAAGAATGAGGGGAAGAAGGGGTTTAAGGTGATTAGTTTGATTGAGAAGTTTAATTGTAGGGCCAGGGATTTGTTTGAGATTCTGATGGATGAGAATAGATGGAGGGGGTTTACGCAGAGCAATGCAAGGATAAGCAAGGAGGTTGGAGGAGAGTTTAGTATTTTTGATGGGTCGGTGACCGGGAAGAATTTGGAGTTGGATGAAGGGAAGCTGATTGTGCAGGGATGGAGGTTTGGGAGCTGGCCGGATGGGATTGAATCCATGGTGAGGATTGTGTTTGAGGAGCCTGAAGATGGAGTCACTGTTGTTAAGCTCACACATAGTGATGTCCCTGAAGAAGACAGATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCGTTTGGTTTTGGAATTTGA

>Glyma02g28830.3   sequence type=CDS   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGTTCGGCGAGGGTGACAAGCGGTGGATCGTGGCTGAGCGCCCCGACGGCACCAACGTGCACAACTGGCACTGGGCCGAGACCAACTGCCTCGAGTGGTCCAGAACCTTTTTCAACAACAGTTTCACCAACGTCGCCGTCGGTGACGGCGATGCCACTGTCACGATCAAGAAGGTGGAGAAGCTCGACGGCGAGGCCTATGTCAACGTCCGCAAGGGGAAGGTGATCCCCGGGTACGAGATCAGCGTGAGGCTCGCTTGGGAGGGCGAGGCGCGTGACGCCGACGGAAAGGTTCTGAAGAGAGTCGACGGCGCCGTCGAGATCCCGTACATCTCTGACGAGAACGCCGGCGAGGATCCGGAAATTAGGGTTTCGGTGAAGGAAAATGGCGAACTTGGGATTAAATTGATGGAGGTGATGTTGAAGAAGGGGAAGGTGGTGGTTTTGGAGAAGGTTAGGGTTTGGGTGGAGAGCATGGCGAAGGGTGGGCCCGTGAAGGACGAGCTCGAAGCGAAGAAGGTGGCTGTTCCTCACAAGAACAACAACAACAATAACAACAATAGTAGTAATGGTGATAACAATGTTAAGAAGGAAGAGGTTAAGAAGAATGAGGGGAAGAAGGGGTTTAAGGTGATTAGTTTGATTGAGAAGTTTAATTGTAGGGCCAGGGATTTGTTTGAGATTCTGATGGATGAGAATAGATGGAGGGGGTTTACGCAGAGCAATGCAAGGATAAGCAAGGAGGTTGGAGGAGAGTTTAGTATTTTTGATGGGTCGGTGACCGGGAAGAATTTGGAGTTGGATGAAGGGAAGCTGATTGTGCAGGGATGGAGGTTTGGGAGCTGGCCGGATGGGATTGAATCCATGGTGAGGATTGTGTTTGAGGAGCCTGAAGATGGAGTCACTGTTGTTAAGCTCACACATAGTGATGTCCCTGAAGAAGACAGATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCGTTTGCAAGGAAAGATTATTGGATTGGCAATTTCTTGTGA

Predicted protein sequences of Glyma02g28830

Limit To All Plant Sequences

>Glyma02g28830.1   sequence type=predicted peptide   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKFGEGDKRWIVAERPDGTNVHNWHWAETNCLEWSRTFFNNSFTNVAVGDGDATVTIKKVEKLDGEAYVNVRKGKVIPGYEISVRLAWEGEARDADGKVLKRVDGAVEIPYISDENAGEDPEIRVSVKENGELGIKLMEVMLKKGKVVVLEKVRVWVESMAKGGPVKDELEAKKVAVPHKNNNNNNNNSSNGDNNVKKEEVKKNEGKKGFKVISLIEKFNCRARDLFEILMDENRWRGFTQSNARISKEVGGEFSIFDGSVTGKNLELDEGKLIVQGWRFGSWPDGIESMVRIVFEEPEDGVTVVKLTHSDVPEEDRYGNATVVENTERGWRDLIFQRIRTAKERLLDWQFLVKDEVSHAQFNDLAGCISS*

>Glyma02g28830.2   sequence type=predicted peptide   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKFGEGDKRWIVAERPDGTNVHNWHWAETNCLEWSRTFFNNSFTNVAVGDGDATVTIKKVEKLDGEAYVNVRKGKVIPGYEISVRLAWEGEARDADGKVLKRVDGAVEIPYISDENAGEDPEIRVSVKENGELGIKLMEVMLKKGKVVVLEKVRVWVESMAKGGPVKDELEAKKVAVPHKNNNNNNNNSSNGDNNVKKEEVKKNEGKKGFKVISLIEKFNCRARDLFEILMDENRWRGFTQSNARISKEVGGEFSIFDGSVTGKNLELDEGKLIVQGWRFGSWPDGIESMVRIVFEEPEDGVTVVKLTHSDVPEEDRYGNATVVENTERGWRDLIFQRIRTAFGFGI*

>Glyma02g28830.3   sequence type=predicted peptide   gene model=Glyma02g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKFGEGDKRWIVAERPDGTNVHNWHWAETNCLEWSRTFFNNSFTNVAVGDGDATVTIKKVEKLDGEAYVNVRKGKVIPGYEISVRLAWEGEARDADGKVLKRVDGAVEIPYISDENAGEDPEIRVSVKENGELGIKLMEVMLKKGKVVVLEKVRVWVESMAKGGPVKDELEAKKVAVPHKNNNNNNNNSSNGDNNVKKEEVKKNEGKKGFKVISLIEKFNCRARDLFEILMDENRWRGFTQSNARISKEVGGEFSIFDGSVTGKNLELDEGKLIVQGWRFGSWPDGIESMVRIVFEEPEDGVTVVKLTHSDVPEEDRYGNATVVENTERGWRDLIFQRIRTAFARKDYWIGNFL*

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