SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G58050 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). | chr3:21492539-21497018 FORWARD LENGTH=1209 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1JFZ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFZ5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8H856 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q8H856_ORYSJ | SoyBase | E_val: 0 | ISS |
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Glyma02g28630 not represented in the dataset |
Glyma02g28630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g16620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g170900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g28630.2 sequence type=CDS gene model=Glyma02g28630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGATCCAACTGTCCATCCTTGGGGTGGTTTGACCACAACGCGTGAGGGTTCATTGACGCTTATGGACTGCTACTTGTATTCAAAGTCTCTGAAAGGACTGCAAATTGTATTTGATGGAGCACGTGCAAGGGAGCGGGAAAGAGAATTGCTTTATCCTGATGCCTGTGGTGGGGGAGGCCGTGGTTGGATAAGCCAAGGAATTGTGAGTTATGGTAGAGGGCATGGGACAAGGGAAACCTGTGCCTTGCACACTGCCAGACTTTCATGTGATACGCTGGTGGATTTTTGGTCAGCACTGGGAGACGAGACAAGGCAATCTCTTCTAAGGATGAAGGAAGAAGATTTTATTGAGAGACTCATGTACAGGTTTGATAGCAAGAGATTTTGTAGAGATTGTAGAAGAAATGTTATTCGAGAATTCAAGGAACTAAAAGAACTGAAGCGCATGAGAAGAGAACCTCGTTGCACCAGCTGGTTTTGTGTTGCCGATACTGCCTTTCAGTATGAGGTATCCAATGACTCAATTCAAGCTGATTGGCGCCTAACATTTGCGGATACTGTTGGATTGTATCATCACTTTGAGTGGGCTGTGGGAACAACTGAAGGAAAATCTGACATTTTGGAATTTGAAAATGTTGGAATGAATGGATGTGTACAAGTCAGTGGCCTAGATCTTGGTGGTTTGAGTGCATGCTTCATCACCCTCCGAGCTTGGAAGCTAGATGGACGCTGTACTGAACTTTCTGTTAAAGCTCATGCATTAAAGGGTCAACGGTGTGTACATTGCAGGCTAATTGTAGGGGATGGTTATGTTACAATAACAAAAGGGGAAAGTATCAGAAGATTCTTTGAGAATGCGGAAGAGGCAGAAGAAGAAGAGGATGATGGTTTGATGGATGAAGATGGAAATGAGATTGATGGAGAATGCTCCCGTCCTCAAAAGCATGCAAAGAGTCCTGAACTTGCTCGAGAATTTCTTCTAGATGCTGCTACTGTTATATTTAAAGAACAGGTCGAGAAGGCTTTCAGAGAAGGAACAGCACGCCAAAATGCGCACAGCATATTTGTTTGTCTTGCACTGAAACTGCTGGAAGAACGAGTTCATGTAGCATGCAAAGAAATCATTACATTAGAAAAGCAGATGAAACTTCTAGAAGAAGAAGAAAAGGAAAAACGTGAAGAAGAAGAACGGAAGGAGAGGAAACGGGCAAAAGAAAGGGAGAAAAAACTTAGGAGAAAGGAAAGACTAAAAGGAAAGGAGAAAGATACAGAAAGAAAGTGTTCCGAATCAATGGATGTTCCTGGATCTACTGAAATCTCAAAGGATGAATTGTCTCCTGCTTCTGATGTAGAACAAAATAATTCTATTAGAAGCAGGAGTTCAGTCATTGTAATAGAGGGTGATTATCCTAAAATACAAGATGAAGACTTCACTAGAGAGGGTAGTACTTTGAGAACACAAGACTGCTCTTACGATGACTGTGAGGGAGACGTTGCAAAAGCGCAACATCACACTTATGATGACTGGGATGGAGACATTGCAAATGCTCAAGACAGGAATAGTACTTCTACAGTTGAGCAATCAAAATTTTATTGTCAAAGACTTAGATTCAGGAAAGAATTTCAACTGGATGCGCCCACAAAGTGGTCTGACAGAAGCCATAATGCAGTTGCTTCAGAAAATGGTGTGGCTGTTGGAAGATCAGAGCCAATACACCATGAAGATAATTTTGGGATGCCTTCCAGGGGAATCAATGGATTGAACAGGCAATCTAGAATAAATGTTGCAAAATCCAATGGTCGAAACATTAGTCATAAGTGCAGTGAGAGGCTTTATAGTTCTAACAGCTGGATAAACGACAGATACAATTTCCATTCATGCAGTTGTAGCCTGAATAATAGAACGAATAGAGTTAGTTGGGAGACAAAACCTGCTAGTAAGTCTGAATCCACAGTTGATACATCTAAGCAATTTTATGGTGGTAGCAAGTATAATCATGTAGACTTCATGCATGAGAGTAATGGAAGAACCAAAGGCAGAGTCATCCCAGGGAACTATTCCAGCAGGGATTTGCCTCAACCAAAGAAAGTTTGGGAGCCTATGAAGTCACACAAGAAGTATGCTCGTAGTAATTCAGACTCTGATGTTACATTGGGGTCCACAAGTCAAGGGTTTCAGTTTGATACAGTAAGGTCTTCTGTTGATGAATTTGGCAGTTCAGGTGAAATTGATGACGAGGATAGTAATTTGAAAAGAAGCAGAATGGTTGAAGGCTGTCAGAATAATCTTGATGCAGAAACTGGAGCATCTTGCAGCTCCACAGAAATTGTGTCTGAGGCTGGAATGTGTCTGATGGGCAGCTCTGCCTTGAATAATTCTTCTGATCCCAATCAAGGTAGCACTTCTAGTTCTGATAACTGCTCATCATGCCTAAGTGAGGGTGATAATAATACAACATCTTCAAACCGTGAAAATACAGAATCCTCGACATCAGATTCAGAAGATGCTAGCCAACAATCTGAAGTAAGAGATAGTTCAACCTGCATTGACAATGGCTTATCTGTTTCTCGTGAAGCTGGGATGAAGAAAATCAATAATGCAAATGATGAGGGTTTGACTAGCAGGTCACCATTTGGTCCATCCTTGGGTGTAACAAGAGGTGATGTATCGGGGAATCCTGTGGTGAAAATTACCCATAATTTTGATAATGGGTTTTCCTCCATTAATAAGTGTTCTCAACCTCAAAGCATGCTTCCTCCAGTGCCAAAGCAAAATGTTCAATTTCCAGTGTTCCAGCCTCCTTCAGCAATGGGATATTACCATCAAAATCCAGTTTCATGGCCAGCTGCTCCCACAAATGGGTTGATGCCTTTCCCACACCCAAACCCCTACTTATATGCTGGCCTGTTTGGATATAGCTTAAATGAGGATCCGTGCTTCTGCTTGCAGTATGGTGGCTTACAGCAACCAGCACCCCTATTTAACCCTGTTGCCGTTCCAGTTTATCAGCCAGTTGCCAGAGCTAAAGGCTTAAATGCAGAAGAACCGACTCTAATGTCTAAGCCAACATCCATGGTGCAAGAGCATTTTAGTAGATTTGCAGTAGAAAAGGTTTCTCTAACCGGAGCTAATTTGCAAAAAGAAGCATTGCATGGGGAAGTTGAATGTGGTAATTCTGCAAAGTCCCAAGGCAGTGGTTTTTCCCTGTTTCATTTTGGTGGCCCTGTAGACCTTTCAACTGGTCATAAATCGGTAACTGCATCTTCAAATGGCGACAATGTTGGAGATTTTAGTTCAAAGAGTTCAGTAGATCAAGTTGACAAAGATCATGATTGCAATAAAAAAGAGGCTACTGTCATTGAGGAGTACAACTTGTTTGCGGCAAGTAATACCTTAAGGTTTTCAATTTTCTAA
>Glyma02g28630.2 sequence type=predicted peptide gene model=Glyma02g28630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQDPTVHPWGGLTTTREGSLTLMDCYLYSKSLKGLQIVFDGARARERERELLYPDACGGGGRGWISQGIVSYGRGHGTRETCALHTARLSCDTLVDFWSALGDETRQSLLRMKEEDFIERLMYRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTAFQYEVSNDSIQADWRLTFADTVGLYHHFEWAVGTTEGKSDILEFENVGMNGCVQVSGLDLGGLSACFITLRAWKLDGRCTELSVKAHALKGQRCVHCRLIVGDGYVTITKGESIRRFFENAEEAEEEEDDGLMDEDGNEIDGECSRPQKHAKSPELAREFLLDAATVIFKEQVEKAFREGTARQNAHSIFVCLALKLLEERVHVACKEIITLEKQMKLLEEEEKEKREEEERKERKRAKEREKKLRRKERLKGKEKDTERKCSESMDVPGSTEISKDELSPASDVEQNNSIRSRSSVIVIEGDYPKIQDEDFTREGSTLRTQDCSYDDCEGDVAKAQHHTYDDWDGDIANAQDRNSTSTVEQSKFYCQRLRFRKEFQLDAPTKWSDRSHNAVASENGVAVGRSEPIHHEDNFGMPSRGINGLNRQSRINVAKSNGRNISHKCSERLYSSNSWINDRYNFHSCSCSLNNRTNRVSWETKPASKSESTVDTSKQFYGGSKYNHVDFMHESNGRTKGRVIPGNYSSRDLPQPKKVWEPMKSHKKYARSNSDSDVTLGSTSQGFQFDTVRSSVDEFGSSGEIDDEDSNLKRSRMVEGCQNNLDAETGASCSSTEIVSEAGMCLMGSSALNNSSDPNQGSTSSSDNCSSCLSEGDNNTTSSNRENTESSTSDSEDASQQSEVRDSSTCIDNGLSVSREAGMKKINNANDEGLTSRSPFGPSLGVTRGDVSGNPVVKITHNFDNGFSSINKCSQPQSMLPPVPKQNVQFPVFQPPSAMGYYHQNPVSWPAAPTNGLMPFPHPNPYLYAGLFGYSLNEDPCFCLQYGGLQQPAPLFNPVAVPVYQPVARAKGLNAEEPTLMSKPTSMVQEHFSRFAVEKVSLTGANLQKEALHGEVECGNSAKSQGSGFSLFHFGGPVDLSTGHKSVTASSNGDNVGDFSSKSSVDQVDKDHDCNKKEATVIEEYNLFAASNTLRFSIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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