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Report for Sequence Feature Glyma02g28612

Feature Type:gene_model
Chromosome:Gm02
Start:29844456
stop:29846799
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g28612
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10450AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L6 family | chr4:6463201-6464458 REVERSE LENGTH=194 SoyBaseE_val: 7.00E-12ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0015934GO-cc Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
GO:0019843GO-mf Annotation by Michelle Graham. GO Molecular Function: rRNA binding SoyBaseN/AISS
PTHR11655Panther 60S RIBOSOMAL PROTEIN L9 FAMILY MEMBER JGI ISS
PTHR11655:SF2Panther 50S RIBOSOMAL PROTEIN L6 JGI ISS
UniRef100_E5GBD5UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein l9 n=1 Tax=Cucumis melo subsp. melo RepID=E5GBD5_CUCME SoyBaseE_val: 2.00E-09ISS
UniRef100_I1MAF0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAF0_SOYBN SoyBaseE_val: 6.00E-16ISS

Expression Patterns of Glyma02g28612
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g28612 not represented in the dataset
Glyma02g28612 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g28612 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g170800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g28612
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g28612
>Glyma02g28612.1   sequence type=CDS   gene model=Glyma02g28612   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTAAAAGGAAGCTTAAGATTCGTGTACGCTCATTTTCCGATCAAAGCTAGCATTGGCAACAACAACAAGTCCATCAAGATCAGAAATTTCCTCGGCGAGAAGAAGGTTCAATGGCGGGGACGTCACTTGCTTTGCAGGAATAATTGGGAACTTGATTGTATATCTGATAACGTGGCTAATGGAAGCTCCTCTCTATTTCCCATTGTTGCAGCAATAATTGCTGACTCTTTCTTTGGCTCATTCCTTGTTGCCTTGGTTTCTTATTGTGTTTCTTTCTTGAGACATGTAGGTGCCCGATCATATTTTGAAAAAAGGGAAGCTTCACTTGTATGGAGTTACAGACATGCAGGTATTGATTTGTTTTTAGGGAGACTATTATTTGTTTTGCTTGCTTGA
Predicted protein sequences of Glyma02g28612
>Glyma02g28612.1   sequence type=predicted peptide   gene model=Glyma02g28612   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVKGSLRFVYAHFPIKASIGNNNKSIKIRNFLGEKKVQWRGRHLLCRNNWELDCISDNVANGSSSLFPIVAAIIADSFFGSFLVALVSYCVSFLRHVGARSYFEKREASLVWSYRHAGIDLFLGRLLFVLLA*






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