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Report for Sequence Feature Glyma02g28577

Feature Type:gene_model
Chromosome:Gm02
Start:29829014
stop:29838631
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g28577
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09660AT Annotation by Michelle Graham. TAIR10: minichromosome maintenance 8 | chr3:2961314-2966166 REVERSE LENGTH=777 SoyBaseE_val: 7.00E-79ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR11630Panther DNA REPLICATION LICENSING FACTOR JGI ISS
PTHR11630:SF47Panther DNA REPLICATION LICENSING FACTOR MCM8 JGI ISS
PF00493PFAM MCM2/3/5 family JGI ISS
UniRef100_B9SGR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA replication licensing factor MCM8, putative n=1 Tax=Ricinus communis RepID=B9SGR4_RICCO SoyBaseE_val: 3.00E-78ISS
UniRef100_I1NA57UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA57_SOYBN SoyBaseE_val: 1.00E-80ISS

Expression Patterns of Glyma02g28577
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g28577 not represented in the dataset
Glyma02g28577 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g28577 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g170600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g28577
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g28577
>Glyma02g28577.2   sequence type=transcript   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACTCTCCAAGACCAAACCCTAGAGCCCTCTTTCTCCCTTCCTCTGTCTTCATCGTTCCCACCCTTCCTTCTCTTTCTCATCTCTCAACACAATCAACGTGGACCTCTAACTATCATTTAATTTCATAACTTTTTTATTTTTTTCAGATTAGGATGGAGCCAATTGCAGTGGATTCCAGTGAGATTCCAGAAGTGTGTAGGAAAAAGGATGGAGTGGGATAAGGAGGTGGTTCATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAAGAAAACGAAGGTCCCATAAGGAAGAAGGTGATTTGGTTGAGGAAGGTCATTAAACCAATTGTTCGTGACCACTGTCAGATTTCGCTGTGTGTTGATCAAGCTCTCTATGGATCCAGATAAACCTGATGAACTTCTAGACAAGCAACTCTCAGAGCACATTATGGCAGTAAGCAAATACTGTCTTCTTACTTTGTGATTGTGATTGTGACTTAAATTTTCAAGTATCCGTTAGTATGAGTTTATACATGGCTTGCTTTCAGTTGAGGAATGGACTGTTCATTTTTTTATTATTTAAAACTTATGAAATCCATTCTAATGTAAATCTAATGGTAAGTGTTGGATTAACAAACAAGTAGATTACAAAATGGGATGAAATTGTTGATTTGTTTTTTTGGTAGTTTTGCATTTTCTGTCTGTCGAAAAGTCATTTTGACATTTAGCTCTTGTATGTTTGACCTATGTTTTAATATTATTTTTTTTATTTGACTTAAGAGACTACTTGATTATTGAGAAAAACAAGCCTCATACGGAGAAAGCTAGCTAGAATCATAAGGAGAAGCAAAAGAGGAAGAGAGAGACCTATCCTCTTGGTGTGATAAAAAGGAACAAGGGAACAATATTATAGTGGCCAGAGCATTGGTATAAACAATGAACACAAATGGACTCATTCCCTTAGTTATTCCAGTTTTTGCAAAGATTGTGAGTCCTATGGTCCAACCTTCCATAATCACCATCAATATGAATGGTAGCACTTCCGACATCTTAGTCTTAACCTCCATTGAATTTAATTTCCTTCTTTTGCTCTGACTTAGAGAGTTATAATATATATGTTAATGATGACATAAAAAGCACTTTCTTCCTTATTATATCTATAATTAGAGCGGGACTATGAGTATGTGGTATATGATCTTTGTGTGTGTGCGCCCCTAGTTGGAGCTTGCACAAGCACCAAGAAACAAACTTACCCTCTCTTTATTGAGCTTGAATTGATAACACTTGTGTGTATATGCTCTTATAATATAAGAAGCAAAGATGGATGCAGATGAGATGAGGCGATGCAAGTGTAATCTTTCACAAAAAG

>Glyma02g28577.3   sequence type=transcript   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACTATTGTCTCGCACTCTCCAACACTCTCCAAGACCAAACCCTAGAGCCCTCTTTCTCCCTTCCTCTGTCTTCATCGTTCCCACCCTTCCTTCTCTTTCTCATCTCTCAACACAATCAACGTGGACCTCTAACTATCATTTAATTTCATAACTTTTTTATTTTTTTCAGATTAGGATGGAGCCAATTGCAGTGGATTCCAGTGAGATTCCAGAAGTGTGTAGGAAAAAGGATGGAGTGGGATAAGGAGGTGGTTCATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAGTAATTTTCTATTTTTTTATTGTTCCCACAATTTCCCTTTAATGGGTCATTCATATTTTGATATTTTGTCAGATTTATCATGATAAAATAATATATAAACACTAATAAATCATATAAAGTTCACTAATATCCAATACATTTCCATTCTCTCTTTAAACGATGTAGACGTTACTAAAAACAAATCAAGCCTAACTCAGTTGAAAAAGCTAGTTAAGGAAGAAAACATGGAACATTTTTATACATCTACCTTATGCTTAGGATTAGATATATAATTTTCATTTATATATCTTGCAGACAAATGATGTTCAAGCTCCACTTTTTCCATTAATTGCAAGGTGTAAGCGGAATGTAGAATATAGGTATAATAAAATAATGAGAATGCCAACTACTAGTAGTACTTAATTAGAACAAAAGTATCAAAATTAAAACGAAAATAACTTTGATGTTGTTAGTATATGAGTTTAATTTTGATACAGTGTAAAAATTTAAATTTTTAATTAATTAGAAACTAATGATTTGTGAAACAATTACTGCAAAAGGTATAGGAGAATATATATAATTAATTGCAAATGTTAGTGTATTTAAATTAGATTCTTAATTAACATATTCATATTGTTATTTTTTGTATCTTTTTTATTTATTGAGACAGTGGAATGATATGATACCGCACTATATTTATTGAGACAGTGAAATCACCTAAGTATTGAGATTCTTTAATTTGTATAAATTGTATTCTATTATTTGCTATCAAAATAAAGCCAGTCATGTAACATAGCAGTGTTTCTTTGACAAATTCTGCAAGTTATTTGTAAAAATCTCTAATTAATTAATATGGACAACATATTATATTATAACATTTATATTAGTTATTTACATTTAAATGGGTTTAATATAAAGTGATCTATTTAAGCGAGCTCATTAGACTGTCAGAAAATTAATATGGGCTTAATGAGCGAAAACCAATTTGACCCATTAGAGGATAATGAAAACCCTAATAGGTTTAAAACCTAAGGAATGGTTATGGTCCCCAATACACCAAAATCAATAAACAGTTTTTCCTCTCCCCATCTGAAGAGAAAACGAAGGTCCCATAAGGAAGAAGGTGATTTGGTTGAGGAAGGTCATTAAACCAATTGTTTGTGACCATTGTCAAATTCCGTTGCGTGTTGATCAAACTCTCTATGGATCCAGTTAATATTACCAGTGCTGCAAATGTTACTGCCAAAGTGAATTCTATCCCAATGCTGAATGGGACAAATTTTAAGGTCTGGAAGGAAGCCGTAGAAATTGTTCTTGGCTGTATGGATTTGGACTTGGCATTGAGGACAGAACGACCCATTTCCACTCCGGAAACCTCTAATGAGGTAAAAAATTGAGAAGTGGGATCGGTCCAACCGAATGTGCCTTATGATCATGAAGCGCTATATTCCAGAGGCGTTTTGGGGCTCTATTTCTGAGGGTCAAAGTGCAAAGAAATTCCTTGAGGAAATTGAGCAATACTTTGCCAGAAATTAAGAGGTGGAGACGAGTAACCTTTTGGCTAAACTCATCTCCATGAAGTATAAAGGTAAAGGAAACATAAGGGAGTACATTATAGAGATGTCCAATCTCGCATCAAAACTCAAGTCACTTAAGTTAGAGCTTGGTGAAGACCTGCTCATGTACTTGGTTTTGATATCACTTCCTGCACACTTTGGGCAATTCAAAGTGAGCTATAACACTTAGAAGGACAAATGGTCCCTCAATGAGCTTATATCTCATTGTGTGCAAGAGGAGGAGAGCCTGTAGAGAGATAGAACTGAAAGTGCTCACTTGATTTCGACCTCTCAGAATAAGAAATGGAAGAAGACTAAGGGTGCTGCGTAAGGGACTTCTTAGCAAAAGAAACAAAATAAGGATGAGGAATTTGCTTGTTACTTCTACAAGAAATCGGGACACATGAAGAAAGAGTGTCTCAAGTATGCCGCATGGCATGTGAAGAAAGGGTTGCCTGTGGAGCCGACTACCAAGTGATGATGAAAGATTCATCTTTTTGGGTGATGGCAAGAAGGTTGCAGTGGAAGCTATTGGAACTTTTAGATTATAGTTAAAAACTGGATTTTATTTGGATTTATTTGAGACTTTTGTTGTACCATCTTTTAGACGGAATTTGATTTGTATTTCTAGTTTGGACAAATTTGGATTTTCTTGTTCATTTGAAAATAATAAAGTTAGTCTCTACCACAATTCAAATATGGCTAGTTCTAGTTCTTTAATTGATAATCTTTACATGCATGATGTTGTTAGTTCCTATAATGAAATACTGCAAATAAGTTCACATGGTACAAAACAAAAATTGAATGAGAATTCAGCCACCTTATGGCATAAGAGTTTGGGCCATATCTCTAAACAAAGAATTCAGAGACTTGTGTTGGATGAAATTCTTGACCCTTTGGATTTATC
Coding sequences of Glyma02g28577
>Glyma02g28577.1   sequence type=CDS   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAAGAAAACGAAGGTCCCATAAGGAAGAAGGTGATTTGGTTGAGGAAGGTCATTAAACCAATTGTTCGTGACCACTGTCAGATTTCGCTGTGTGTTGATCAAGCTCTCTATGGATCCAGAGACTACTTGATTATTGAGAAAAACAAGCCTCATACGGAGAAAGCTAGCTAG

>Glyma02g28577.2   sequence type=CDS   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAAGAAAACGAAGGTCCCATAAGGAAGAAGGTGATTTGGTTGAGGAAGGTCATTAAACCAATTGTTCGTGACCACTGTCAGATTTCGCTGTGTGTTGATCAAGCTCTCTATGGATCCAGATAA

>Glyma02g28577.3   sequence type=CDS   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAGTAA
Predicted protein sequences of Glyma02g28577
>Glyma02g28577.1   sequence type=predicted peptide   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGNPGLGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYKENEGPIRKKVIWLRKVIKPIVRDHCQISLCVDQALYGSRDYLIIEKNKPHTEKAS*

>Glyma02g28577.2   sequence type=predicted peptide   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGNPGLGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYKENEGPIRKKVIWLRKVIKPIVRDHCQISLCVDQALYGSR*

>Glyma02g28577.3   sequence type=predicted peptide   gene model=Glyma02g28577   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGNPGLGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYK*






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