Glyma02g28000 - SoyBase

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Report for Sequence Feature Glyma02g28000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	29345160
stop:	29353913
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g28000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10370	AT	Annotation by Michelle Graham. TAIR10: FAD-dependent oxidoreductase family protein \| chr3:3216502-3219027 FORWARD LENGTH=629	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006071	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol metabolic process	SoyBase	N/A	ISS
GO:0006072	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process	SoyBase	N/A	ISS
GO:0006127	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerophosphate shuttle	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0019563	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol catabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0009331	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: glycerol-3-phosphate dehydrogenase complex	SoyBase	N/A	ISS
GO:0004368	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0042	KOG	Glycerol-3-phosphate dehydrogenase	JGI		ISS
PTHR11985	Panther	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	JGI		ISS
PF01266	PFAM	FAD dependent oxidoreductase	JGI		ISS
UniRef100_G7I7V6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate dehydrogenase SDP6 n=1 Tax=Medicago truncatula RepID=G7I7V6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JFY8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFY8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g28000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g28000 not represented in the dataset	Glyma02g28000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g28000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g165500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g28000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g28000

Limit To All Plant Sequences

>Glyma02g28000.1   sequence type=CDS   gene model=Glyma02g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCGCCTCAGGCGACTCGGAGCCGCCGTCGGAGCGGCCATGGCCACTGCATACGGCGGCGCCATCCTCGTCTCCACTCCGGTCTCTGCCAGCGACCACAGCGTCGGAGGGTCGCACCTCGCCGCCGTTCGGGAGAAGATCCACGACCCCTTCGCCGTCGTGCCGGCGAGAGAGGTCCAGCGGTCGGCGCTGACCGGCGCCAGCGCCGCGAACCCTCTAGACATGCTCGTCATCGGCGGCGGCGCCACCGGCTCCGGCGTGGCGCTCGATGCTGTCACCCGAGGGCTCCGTGTCGGTCTCGTCGAGAGGGAGGATTTCTCCTCCGGAACTTCCTCTCGCTCCACCAAGCTCATTCATGGAGGTGTTCGTTACCTGGAGAAAGCTGTCTTTAAACTTGACTATGGCCAACTGAAGTTAGTATTCCATGCACTTGAGGAGCGCAAACAGCTTATTGACAATGCACCACACCTATGCCATGCTTTGCCTTGCATGACACCTTGTTTTGACTGGTTTGAAGTAGTGTACTACTGGATGGGCTTGAAAATGTACGATTTGGTCGCAGGAGCACGACTCTTGCACTTATCGAGATATTATTCTGCAAAAGAGTCTGTTGAGCTTTTTCCCACTCTGGCAAAGGAGGGAAAAGGTAGAAGCCTGAGGGGCACAGTTGTGTATTATGATGGGCAGATGAATGATTCACGACTTAATGTTGGATTGGCTTGCACAGCGGCATTAGCTGGTGCAGCAGTGCTGAACCACGCTGAAGTTGTATCCTTACTGAAGGATGAAGCCAGTGAACGCATAATTGGTGCACGAATTAGGGACAATTTAACTGGAAAAGAGTTTGATACGTATGCAAAAGTAATTGTGAATGCGGCTGGGCCATTTTGTGATTCAGTAAGAAAAATGGCTGACAAAAGTGCACGAGACATGATTTCTCCTAGCAGTGGTGTACATATTATACTCCCTGATTATTATTCTCCAGAGGGAATGGGCTTAATTGTTCCCAAAACTAAGGATGGACGTGTTGTTTTCATGCTACCATGGTTGGGACGAACGGTTGCTGGAACTACAGATTCCAACACTAGCATTACCTTTCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCGATGGACCCAACAGCTAAAAATACCGAGAGTATCTCCAGGGATCATGTTGTCTTTGAGGATCACCCTGGTTTGGTCACCATTACTGGTGGCAAGTGGACTACCTATCGAAGCATGGCAGAAGATGCTGTCAATTCAGCTATAAAGTCTGGGAAGTTGACCCCCGCCAATGGATGTATCACCAACAATATCAGGATTGTTGGTGGTGAAGGGTGGGATCCTGTTTCCTTTACCATTCTTTCTCAACAGTATATGCGCATGAAAGTCACATATAGGGGTAAAGTTGTTCCTGGTGTGATGGACACTGCTTCAGCAAAGCACTTGTCTCATGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAGAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCTGAGGTGGCCTACTGTGCCCGTCATGAATATTGTGAATCTGCGATTGACTTCATTGCTAGGAGATCTCGTCTTGCTTTCCTGGACACGGATGCAGCAGGACGGGCATTACCTCGTGTGATTCAAATATTGGCAGCTGAGCACAAATGGGACAAGTCAAGGCAGAAGGAAGAGATGTTTAAAGCTAAAGAATTTTTGGAGACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAG

Predicted protein sequences of Glyma02g28000

Limit To All Plant Sequences

>Glyma02g28000.1   sequence type=predicted peptide   gene model=Glyma02g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRLRRLGAAVGAAMATAYGGAILVSTPVSASDHSVGGSHLAAVREKIHDPFAVVPAREVQRSALTGASAANPLDMLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFKLDYGQLKLVFHALEERKQLIDNAPHLCHALPCMTPCFDWFEVVYYWMGLKMYDLVAGARLLHLSRYYSAKESVELFPTLAKEGKGRSLRGTVVYYDGQMNDSRLNVGLACTAALAGAAVLNHAEVVSLLKDEASERIIGARIRDNLTGKEFDTYAKVIVNAAGPFCDSVRKMADKSARDMISPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSNTSITFLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPTAKNTESISRDHVVFEDHPGLVTITGGKWTTYRSMAEDAVNSAIKSGKLTPANGCITNNIRIVGGEGWDPVSFTILSQQYMRMKVTYRGKVVPGVMDTASAKHLSHAYGTLAERVAAIAQNENLGKRLAHGYPFLEAEVAYCARHEYCESAIDFIARRSRLAFLDTDAAGRALPRVIQILAAEHKWDKSRQKEEMFKAKEFLETFKSSRNAQFYDGKHN*

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