SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g27230

Feature Type:gene_model
Chromosome:Gm02
Start:28608286
stop:28611145
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g27230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03760AT Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 20 | chr3:943632-944673 FORWARD LENGTH=273 SoyBaseE_val: 2.00E-69ISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:1900150GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF03195PFAM Protein of unknown function DUF260 JGI ISS
UniRef100_B9SI79UniRef Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SI79_RICCO SoyBaseE_val: 8.00E-88ISS
UniRef100_I1JFY2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFY2_SOYBN SoyBaseE_val: 7.00E-159ISS

Expression Patterns of Glyma02g27230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g27230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g166400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g27230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g27230
>Glyma02g27230.1   sequence type=CDS   gene model=Glyma02g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGTCACAAGGTGGTAGTGGCGGTGACGACGGCGCTTCTGGAAGCAGGCGTAGAGGCTCTACTTCCAGGCGTGCCATGGCAGCACAAACACAAGATGAAGCAATGGTGGAATCTTCACCCACAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAGGTGCGTTGAGGGGTGCATCTTTGCACCCCACTTTGGTACTGACCAGGGTGCAGCCAAGTTTGCAGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCAAAGCTCTTGTCCAACATTCCGGTGAACCGCCGCAATGAAGCATCGACAACAATATCATATGAGGCGCAGGCAAGGTTGTCTGATCCAGTTTATGGTTGTGTCTCCACCATCCTTGCTCTGCAACAGCAGGTGGCAACTTTGCAAGCAGAGCTAGCTATGTTGCAAACTCAGCTCATGAATAGTAGGTTTGCCTATGCAAGTGCACTTCAGACCACACAACTACAACAACCAAATATGAATACAGGAGCATTGCAACCAGCATATTCCAACAATTCATGTGCTTCCACCAACCTTCTAAACTTGAGCACCTTCAACAATAACCCTAGCTTTGTCCTTGAAATGGACACAGCACCCTCCTCAAGTTTGGAGCCTCTTCAACTCACGAGGTTGTCCCAATGTAAGGAAGAGGATGAAGAAGAAAACAAGACTCAGAAAGCCTTTAACCACCGTTAA
Predicted protein sequences of Glyma02g27230
>Glyma02g27230.1   sequence type=predicted peptide   gene model=Glyma02g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESQGGSGGDDGASGSRRRGSTSRRAMAAQTQDEAMVESSPTTPCGACKFLRRRCVEGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPVNRRNEASTTISYEAQARLSDPVYGCVSTILALQQQVATLQAELAMLQTQLMNSRFAYASALQTTQLQQPNMNTGALQPAYSNNSCASTNLLNLSTFNNNPSFVLEMDTAPSSSLEPLQLTRLSQCKEEDEEENKTQKAFNHR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo