SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03760 | AT | Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 20 | chr3:943632-944673 FORWARD LENGTH=273 | SoyBase | E_val: 2.00E-69 | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:1900150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF03195 | PFAM | Protein of unknown function DUF260 | JGI | ISS | |
| UniRef100_B9SI79 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SI79_RICCO | SoyBase | E_val: 8.00E-88 | ISS |
| UniRef100_I1JFY2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFY2_SOYBN | SoyBase | E_val: 7.00E-159 | ISS |
|
Glyma02g27230 not represented in the dataset |
Glyma02g27230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g166400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g27230.1 sequence type=CDS gene model=Glyma02g27230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGAGTCACAAGGTGGTAGTGGCGGTGACGACGGCGCTTCTGGAAGCAGGCGTAGAGGCTCTACTTCCAGGCGTGCCATGGCAGCACAAACACAAGATGAAGCAATGGTGGAATCTTCACCCACAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAGGTGCGTTGAGGGGTGCATCTTTGCACCCCACTTTGGTACTGACCAGGGTGCAGCCAAGTTTGCAGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCAAAGCTCTTGTCCAACATTCCGGTGAACCGCCGCAATGAAGCATCGACAACAATATCATATGAGGCGCAGGCAAGGTTGTCTGATCCAGTTTATGGTTGTGTCTCCACCATCCTTGCTCTGCAACAGCAGGTGGCAACTTTGCAAGCAGAGCTAGCTATGTTGCAAACTCAGCTCATGAATAGTAGGTTTGCCTATGCAAGTGCACTTCAGACCACACAACTACAACAACCAAATATGAATACAGGAGCATTGCAACCAGCATATTCCAACAATTCATGTGCTTCCACCAACCTTCTAAACTTGAGCACCTTCAACAATAACCCTAGCTTTGTCCTTGAAATGGACACAGCACCCTCCTCAAGTTTGGAGCCTCTTCAACTCACGAGGTTGTCCCAATGTAAGGAAGAGGATGAAGAAGAAAACAAGACTCAGAAAGCCTTTAACCACCGTTAA
>Glyma02g27230.1 sequence type=predicted peptide gene model=Glyma02g27230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESQGGSGGDDGASGSRRRGSTSRRAMAAQTQDEAMVESSPTTPCGACKFLRRRCVEGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPVNRRNEASTTISYEAQARLSDPVYGCVSTILALQQQVATLQAELAMLQTQLMNSRFAYASALQTTQLQQPNMNTGALQPAYSNNSCASTNLLNLSTFNNNPSFVLEMDTAPSSSLEPLQLTRLSQCKEEDEEENKTQKAFNHR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
