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Report for Sequence Feature Glyma02g27171

Feature Type:gene_model
Chromosome:Gm02
Start:28287878
stop:28288373
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g27171
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17440AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1639) | chr4:9727848-9728823 FORWARD LENGTH=215 SoyBaseE_val: 2.00E-17ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07797PFAM Protein of unknown function (DUF1639) JGI ISS
UniRef100_G7JHQ0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JHQ0_MEDTR SoyBaseE_val: 3.00E-31ISS
UniRef100_Q9C5E4UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3G60410 protein n=1 Tax=Arabidopsis thaliana RepID=Q9C5E4_ARATH SoyBaseE_val: 2.00E-13ISS

Expression Patterns of Glyma02g27171
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g27171 not represented in the dataset
Glyma02g27171 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g27171 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g166600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g27171
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g27171
>Glyma02g27171.1   sequence type=CDS   gene model=Glyma02g27171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTGCAGTGTGAAGAAAGAGAAGAGGAAATTCTGGATTGCTCTCTCATGTGAAGAGATCAAAGAAGACATCTTCGTCATGACGAGCCCTAAGCCCGCTCGCCGGCCTAGGAAGCAGCCCAAGAATGTCCAGAAACAAATGCATAGTGTGTTCCTTGGCTTATGGTTAGTAGGGATAACTGCGGATGCTTACAGAGTCACTGATACACCCGCCAAGGTTCTTTTTTTTTTTCTTTCCCTTTTTTAA
Predicted protein sequences of Glyma02g27171
>Glyma02g27171.1   sequence type=predicted peptide   gene model=Glyma02g27171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCSVKKEKRKFWIALSCEEIKEDIFVMTSPKPARRPRKQPKNVQKQMHSVFLGLWLVGITADAYRVTDTPAKVLFFFLSLF*






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