SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05800 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:1743234-1744751 REVERSE LENGTH= | SoyBase | E_val: 3.00E-20 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7ITS0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PIF-like protein n=1 Tax=Medicago truncatula RepID=G7ITS0_MEDTR | SoyBase | E_val: 2.00E-29 | ISS |
| UniRef100_I1JFX2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JFX2_SOYBN | SoyBase | E_val: 2.00E-161 | ISS |
|
Glyma02g27050 not represented in the dataset |
Glyma02g27050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g166900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g27050.2 sequence type=CDS gene model=Glyma02g27050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCTCAATCAAGTTCCTGTGAAAAGAAAGAAAGCAGAATGGTGTGATAAAAATACTAAGATTATGTTGAAAGTGTGCATAGAAGAGCAATTCAGAAATAGGTTGGATTCTTTGAAAAAGGAATGGCAATTATGGGCCAAGCTTATTGGGAAGGACACAGGTCTTGGCTGGGATGGGGAGAAGAAAACCATTGCAGCTAGTGATGAATGGTGGGAAGCCAAAATTCAGGAGGATCCTGAAGTAGCAAAGTTTAGAGAGCAAGGCCTCAAATTCTTACCTGAGATGGAATTCCTTTTTAAAGGTACTATTGCTACTGGTTTTGCAGCATATGCACCATCTGAAGATTCAAGACAATATGAAGGATTCAACACAAGAACAGAAGAGACAAATGATAACATTGATGATAACACTGACATGGAAGTGAATGAGCCTGAGATAGACACGACAACTCAGAACACGTCTTCGGCAAAGGAAAATGGACAGAGGAAGAGAGGAAGAGAGGGTGATAAAAGAATTGGGGTTGCTGCCAAGCTTTCCTCACAATTAGATCGTATTATTCAAACATTTGAATCTAGTGTATCTGCTCAAGACCCAACTAGCATTACTGCATGTGTAGCAAAGTTGAAAGATCTACCAGGACTTGAGCGTGGGAGTGAACTATTTTACAAAGCCACTAAACTTATGAAAAAAAGGGCAAACAGGATCACCTTTGTTGCTTTAGAAGGGCCTGAGCTACAACTTGGATGGATCAAGTCTGAAACTTAA
>Glyma02g27050.2 sequence type=predicted peptide gene model=Glyma02g27050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLNQVPVKRKKAEWCDKNTKIMLKVCIEEQFRNRLDSLKKEWQLWAKLIGKDTGLGWDGEKKTIAASDEWWEAKIQEDPEVAKFREQGLKFLPEMEFLFKGTIATGFAAYAPSEDSRQYEGFNTRTEETNDNIDDNTDMEVNEPEIDTTTQNTSSAKENGQRKRGREGDKRIGVAAKLSSQLDRIIQTFESSVSAQDPTSITACVAKLKDLPGLERGSELFYKATKLMKKRANRITFVALEGPELQLGWIKSET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
