SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49930 | AT | Annotation by Michelle Graham. TAIR10: zinc knuckle (CCHC-type) family protein | chr5:20308260-20312736 REVERSE LENGTH=1080 | SoyBase | E_val: 1.00E-40 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR15239 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04607 | PFAM | Region found in RelA / SpoT proteins | JGI | ISS | |
| UniRef100_G7IL23 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serologically defined colon cancer antigen-like protein n=1 Tax=Medicago truncatula RepID=G7IL23_MEDTR | SoyBase | E_val: 6.00E-41 | ISS |
| UniRef100_I1L0M7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0M7_SOYBN | SoyBase | E_val: 3.00E-43 | ISS |
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Glyma02g27016 not represented in the dataset |
Glyma02g27016 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g27016.1 sequence type=CDS gene model=Glyma02g27016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGAATTGATAGAATATAACTTGGAAGATGTGGATGCTGCTATATTAGTTGTTCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGTTGGAAACCCAGTAGCTGGTCTCATTGATAAGCTTCATCTCGACAGGAACTGCATGACTTTACTGTTAAACAACAATCTTGATGAAATGGATGATGATGAGAAGACACTCCCTGTGGATAAGCTAGAGTTAAGAATTTTTTATGTTTTATATCCTATTATCCTGTTCAAACACTGCAGTTTTGTTTTGAGTTTGGATATGGCAGTTGAAGTGATTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAATAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGAACAGAATATGTGTTTCAGGAATCAAGAAAGCAGTGGAAGAACTCAATCCAATGAGGAGAACAGTTTTTGGCATGCTCTACAACTACAAACTTGGTTGGATGAAAAAAGGATACAAACATAGACAAGCATCACGTTTAGCTGATTTATTAGCCTTCAAAAAGCTAGGCTTGGGGTCGTGTTCGACTAATAATACTGGTGGGGTAGCCTTGAGCCCAGAGGTGGAAGAATTCTTGGGTGTCACTACTTGTGCCTTTCTATGGCAAGGCTATGGTCTGACATAA
>Glyma02g27016.1 sequence type=predicted peptide gene model=Glyma02g27016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVELIEYNLEDVDAAILVVRVALAKGMNWDDLARMVKEEKKVGNPVAGLIDKLHLDRNCMTLLLNNNLDEMDDDEKTLPVDKLELRIFYVLYPIILFKHCSFVLSLDMAVEVIENGKTRPLMEIQIRTTEMDRLAVGGIAAHSLYKAGLTDPEENRICVSGIKKAVEELNPMRRTVFGMLYNYKLGWMKKGYKHRQASRLADLLAFKKLGLGSCSTNNTGGVALSPEVEEFLGVTTCAFLWQGYGLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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