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Report for Sequence Feature Glyma02g26890

Feature Type:gene_model
Chromosome:Gm02
Start:27994968
stop:27997446
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g26890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06600AT Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985 SoyBaseE_val: 3.00E-26ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
GO:0004843GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity SoyBaseN/AISS
PF00917PFAM MATH domain JGI ISS
UniRef100_G7LEE7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Medicago truncatula RepID=G7LEE7_MEDTR SoyBaseE_val: 4.00E-48ISS
UniRef100_UPI0002337B37UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337B37 related cluster n=1 Tax=unknown RepID=UPI0002337B37 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g26890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g26890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g167600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g26890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g26890
>Glyma02g26890.1   sequence type=CDS   gene model=Glyma02g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATGAATTGACAACAGGTGTTGATTTTGAGAAATTCTCATGGAAAATTGAGGATTTCTCAAAAAAAAATCTCATGAAATTGCGCTCCAAGCCTTTCAAAATCCGGGGTTGTACATGGAGGCTCCTTGTGTATCCACTGAGGAGGGATGTGAATCACTTTTCAGTGTATTTGATGGTTGCTGATTCTTTACCGCCGTACGGATGGAGCAGAAACACTTTTTTCAAGTTAGCTCTAATAAATCAGGTGGATAGGAATAAGTCTATAGCTAAAGAGACACAACAAAAGTTCAATGGAGGATATCGTTGCTGGGGTTCATTTTTCTTGAATCTTACTGATTTCAATAACCCAAAACAAGGGTATCTTGTGAGGAACACATGCATAATCGAAGCACACATATGTGTCTCCGATTTAGCACCTAAGATTCAAGTCCACCCAAATAGTTCTCCCATCCATGACTCTTGTGATCAAGCAACAGAAGAATCATCCTCAGATGATAGGGACACCATTAGTCCAAGAACCTCAGGATCTAGTACTGCAGCAGAAGGTGAAATTCAAGGCTCAAACAATTTGACACTAAGAGAACTCATAGATTTTGAGAGTTTAGGAGCAGAAGAACAAGCATTCATTCCACTCTTGGAAGAGGTTTGCATATGGCACCCTAATCTGATAAAGTGCCAAAGGGAAAGGACTAGAAGGTTTAGACAATGGGCCTTTACTTCTTTGGGCCATGTTTTGCATTTTCTCAAGACCAAAAGGGTTAAAGACATCAATGAAGAGGACATAAAGTACCTTCATGGCTTGTGGAAGGAACTTGTGAAGTCCTCAGGGTTTGACCTGGCTTGGCTGGAGCCATATGTTCAATTAGCATTGGGTTCGAGGGCATATATGGAAAGAGCAAACCAATTGAAGAAGCTGAAGGACAAGGTGGTTGCTTTGGAGATTAAGATGAAGCGGCTCAGGGGGGAACTTGCTGCTGCTGAAGGAGAGTTTGAAGTGGCAAGGAGAGGCTTGTCTGAAGTAAGAAGAGGCTTCAATGAGATGGATTTAAATGCTGCAATTGGTTATGCTATGTTTTGA
Predicted protein sequences of Glyma02g26890
>Glyma02g26890.1   sequence type=predicted peptide   gene model=Glyma02g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNELTTGVDFEKFSWKIEDFSKKNLMKLRSKPFKIRGCTWRLLVYPLRRDVNHFSVYLMVADSLPPYGWSRNTFFKLALINQVDRNKSIAKETQQKFNGGYRCWGSFFLNLTDFNNPKQGYLVRNTCIIEAHICVSDLAPKIQVHPNSSPIHDSCDQATEESSSDDRDTISPRTSGSSTAAEGEIQGSNNLTLRELIDFESLGAEEQAFIPLLEEVCIWHPNLIKCQRERTRRFRQWAFTSLGHVLHFLKTKRVKDINEEDIKYLHGLWKELVKSSGFDLAWLEPYVQLALGSRAYMERANQLKKLKDKVVALEIKMKRLRGELAAAEGEFEVARRGLSEVRRGFNEMDLNAAIGYAMF*






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