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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma02g26860

Feature Type:gene_model
Chromosome:Gm02
Start:27966406
stop:27968883
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g26860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11930AT Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:3776371-3777393 FORWARD LENGTH=199 SoyBaseE_val: 4.00E-65ISS
GO:0002238GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00582PFAM Universal stress protein family JGI ISS
UniRef100_D7LAT3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LAT3_ARALL SoyBaseE_val: 7.00E-64ISS
UniRef100_I1JFX0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFX0_SOYBN SoyBaseE_val: 1.00E-139ISS

Expression Patterns of Glyma02g26860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g26860 not represented in the dataset
Glyma02g26860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g26860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g167700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g26860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g26860
>Glyma02g26860.1   sequence type=CDS   gene model=Glyma02g26860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGAACTAATAGTAGCGGTGATAACGTGAGTGCGGGTGTGGTGCAGAGTAGGATGAGGATGAAGGTGATGGTGGCTATAGACGAGAGTGAAGGAAGCTTCTATGCTCTTAAGTGGGCCCTTGATAACCTCTTCACCACCATGGCCACTGTGGGAGAAGCATCATCACCTGAAAATGATGGCATGGTGTTCTTGGTTCATGTTGAGCCCAAAGTTCACAACTATGTGTATCCCATCGGACCCGGTGGAGCAGCCTTTTATCCTGCAACTGTAGTAGTGGATTCGGTGAAGAAAGCACAACAAGAACGATCAGCAGCTATTCTCTCACGGGCATTGAAAATGTGCCATGATAAGCTGGTGAAAGGAGAGAGTATTATTCTTCATGGAGACGCAAGGGAAATGATTTGTGAAGCCGCAGAGCAAATGCAAATTAATCTCCTAGTCTTGGGTAGCCGTGGCCTTGGCACGCTCAAAAGGACATTTCTTGGAAGTGTAAGCGACTATTGCGCACATCATGCAAAAACACCGATCCTTATTGTGAAACCACCATCAGAGCATAGCAAAATGCAGTAG
Predicted protein sequences of Glyma02g26860
>Glyma02g26860.1   sequence type=predicted peptide   gene model=Glyma02g26860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGTNSSGDNVSAGVVQSRMRMKVMVAIDESEGSFYALKWALDNLFTTMATVGEASSPENDGMVFLVHVEPKVHNYVYPIGPGGAAFYPATVVVDSVKKAQQERSAAILSRALKMCHDKLVKGESIILHGDAREMICEAAEQMQINLLVLGSRGLGTLKRTFLGSVSDYCAHHAKTPILIVKPPSEHSKMQ*






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