Glyma02g26840 - SoyBase

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Report for Sequence Feature Glyma02g26840

Feature Type:	gene_model
Chromosome:	Gm02
Start:	27945413
stop:	27948329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g26840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37270	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein 5B \| chr2:15647883-15649042 REVERSE LENGTH=207	SoyBase	E_val: 9.00E-134	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3291	KOG	Ribosomal protein S7	JGI		ISS
PTHR11205	Panther	RIBOSOMAL PROTEIN S7	JGI		ISS
PTHR11205:SF1	Panther	40S RIBOSOMAL PROTEIN S5	JGI		ISS
PF00177	PFAM	Ribosomal protein S7p/S5e	JGI		ISS
UniRef100_I1JFW6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JFW6_SOYBN	SoyBase	E_val: 3.00E-148	ISS
UniRef100_O65731	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S5 (Fragment) n=1 Tax=Cicer arietinum RepID=RS5_CICAR	SoyBase	E_val: 7.00E-134	ISS

Expression Patterns of Glyma02g26840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g26840 not represented in the dataset	Glyma02g26840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g26840

Paralog	Evidence	Comments
Glyma09g15680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g26840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g167900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g26840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g26840

Limit To All Plant Sequences

>Glyma02g26840.2   sequence type=transcript   gene model=Glyma02g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCGAAAAACCTAGGGTTTTTGTCGTCGCTACTAAGAGTTGCTGCTTCTTCAGCCACTCCGCACCTCGCAGCCTCTGTGCCCTCAACAACCATGGCTGAAATCGAAACTACCGTTCCAGATCCCACCCAAATCGACGTCAAACTCTTCAATCGCTGGAGCTTCGAGGATGTTGAGGTTAATGATATGTCTCTGGCTGATTACATTGGAGTGTCCCCATCAAAGCATGCTACATATGTTCCTCACACTGCTGGTAGGTACTCAGTGAAGAGGTTCAGGAAAGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTGATGATGCACGGGAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCCATGGAGATCATCCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCTGTTGATATCTCACCCCTTCGACGTGTTAATCAGGCTATATATCTTCTAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCCGATGAACTTATTAATGCAGCCAAAGGTTCATCCAATAGGTATACTTTTGCAATCCTATTCATTTAACATACATTTTTGTTTGTCATTTTAAATTTTTTTGTTGGTTTTGTTGAATAATATTTCTCAATTTCAGTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTAAGCCAACCCAACAACCAGTATTGTGGCCAGAAAGATTTCGACCTTTGTACTTCATTTATTTAAATTTTGAATATTGTGTATTACTTTTGATGAATTTAGTTAATTTTTAGTTCGCGTAAGGATTTTACATGAACGATTTATTTAGTTAATTTAGTTTGCGTAAGGATTTTACATGAACGATTTATTTAGTTAATTTAGTTTGCGTAAGGATTTTACATGAACGATTTATTTAGTTAATTTTTAGTTTGCGTAAGTATTTTACATGAACGATTTTGTTTCTTGGACGAAAATTATATTCCAATACTTGGGAGTTTAGTAATGACCAA

Coding sequences of Glyma02g26840

Limit To All Plant Sequences

>Glyma02g26840.1   sequence type=CDS   gene model=Glyma02g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAATCGAAACTACCGTTCCAGATCCCACCCAAATCGACGTCAAACTCTTCAATCGCTGGAGCTTCGAGGATGTTGAGGTTAATGATATGTCTCTGGCTGATTACATTGGAGTGTCCCCATCAAAGCATGCTACATATGTTCCTCACACTGCTGGTAGGTACTCAGTGAAGAGGTTCAGGAAAGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTGATGATGCACGGGAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCCATGGAGATCATCCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCTGTTGATATCTCACCCCTTCGACGTGTTAATCAGGCTATATATCTTCTAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCCGATGAACTTATTAATGCAGCCAAAGGTTCATCCAATAGTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTAA

>Glyma02g26840.2   sequence type=CDS   gene model=Glyma02g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAATCGAAACTACCGTTCCAGATCCCACCCAAATCGACGTCAAACTCTTCAATCGCTGGAGCTTCGAGGATGTTGAGGTTAATGATATGTCTCTGGCTGATTACATTGGAGTGTCCCCATCAAAGCATGCTACATATGTTCCTCACACTGCTGGTAGGTACTCAGTGAAGAGGTTCAGGAAAGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTGATGATGCACGGGAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCCATGGAGATCATCCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCTGTTGATATCTCACCCCTTCGACGTGTTAATCAGGCTATATATCTTCTAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCCGATGAACTTATTAATGCAGCCAAAGGTTCATCCAATAGGTATACTTTTGCAATCCTATTCATTTAA

Predicted protein sequences of Glyma02g26840

Limit To All Plant Sequences

>Glyma02g26840.1   sequence type=predicted peptide   gene model=Glyma02g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEIETTVPDPTQIDVKLFNRWSFEDVEVNDMSLADYIGVSPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*

>Glyma02g26840.2   sequence type=predicted peptide   gene model=Glyma02g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEIETTVPDPTQIDVKLFNRWSFEDVEVNDMSLADYIGVSPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNRYTFAILFI*

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