Glyma02g26820 - SoyBase

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Report for Sequence Feature Glyma02g26820

Feature Type:	gene_model
Chromosome:	Gm02
Start:	27901742
stop:	27909236
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g26820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11945	AT	Annotation by Michelle Graham. TAIR10: homogentisate prenyltransferase \| chr3:3780041-3782880 REVERSE LENGTH=386	SoyBase	E_val: 0	ISS
PTHR11048	Panther	PRENYLTRANSFERASES	JGI		ISS
PTHR11048:SF1	Panther	4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE	JGI		ISS
PF01040	PFAM	UbiA prenyltransferase family	JGI		ISS
UniRef100_I1JFW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFW4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1ACB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homogentisate phytyltransferase VTE2-2 n=1 Tax=Glycine max RepID=Q1ACB2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g26820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g26820

Paralog	Evidence	Comments
Glyma09g15720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g26820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g168000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g26820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g26820

Limit To All Plant Sequences

>Glyma02g26820.2   sequence type=transcript   gene model=Glyma02g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAATTTGAGGCACTGGTAAGTTGTGGCCCCACAAGATTGCTACTGTGACTTCGGGAGCAAAGGCTCTACAATTTACACACATTTTTTTGCCTTGTGTTGTGTCTGAAAGTTGGAGTGTTTTCTCGTTTGCTGTGCTCAGCTCCTTATGGAGCTCTCACTCTCTCCAACTTCACATCGAGTTCCTTCCACAATTCCCACTTTGAATTCCGCTAAACTATCATCCACTAAGGCCACCAAGTCACAACAACCTTTGTTCTTAAGATTTTCCAAACACTTCAACTCAATTGGGTTGCACCATCACAGTCACAGATGCTGCTCAAATGCTGTTCCCGAGAGACCCCAGAGACCCAGTTCCATAAGGGCTTGCACTGGAGTTGGAGCTTCTGGATCTGATCGTCCATTAGCTGAAAGACTTTTAGATCTGAAAGATGCTTGTTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCTGCTGGCCTGTCAATTGTGGGGTTGAACTTTGGGCCCTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTTCGGGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGCTTTCAGGCGTTGGTTACTCATACCGGCTCATACGATTTTTGCAATAAGCTTGATTTACCAGGCATGGATATTAGAACAAGCAAATTATACCAAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAGCAAGCCTTGCTACATTTTTCTTGGGAAAAGGTGCATACGTGCATAGTTAGAGAGATCTTCTTTGTTGTCTCAAGTATCAATTAGTAAACTAGCTATTTTTTTAATGAGTATTTTTGTATATAAATGTGTGATACTATTTGCTTTTACTTTGATGTAATGCCATTAACATATTTCATAATGTTACACGGACAATATTTTGCATTGTTTTTATACCTCCAAGCTATTCTTTGTCGACCATTTTTAACTCGGATTTTTTTAAAAAGTTGTCAGTGCAATGTAGTTTATGTTCAAGTAAGCAT

Coding sequences of Glyma02g26820

Limit To All Plant Sequences

>Glyma02g26820.1   sequence type=CDS   gene model=Glyma02g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTCTCACTCTCTCCAACTTCACATCGAGTTCCTTCCACAATTCCCACTTTGAATTCCGCTAAACTATCATCCACTAAGGCCACCAAGTCACAACAACCTTTGTTCTTAAGATTTTCCAAACACTTCAACTCAATTGGGTTGCACCATCACAGTCACAGATGCTGCTCAAATGCTGTTCCCGAGAGACCCCAGAGACCCAGTTCCATAAGGGCTTGCACTGGAGTTGGAGCTTCTGGATCTGATCGTCCATTAGCTGAAAGACTTTTAGATCTGAAAGATGCTTGTTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTTGCTTTGGTGGCAAGAGCATTGATTGAGAACACCAATTTGATAAAGTGGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCTGCTGGCCTGTCAATTGTGGGGTTGAACTTTGGGCCCTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTTCGGGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGCTTTCAGGCGTTGGTTACTCATACCGGCTCATACGATTTTTGCAATAAGCTTGATTTACCAGGCATGGATATTAGAACAAGCAAATTATACCAAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAG

>Glyma02g26820.2   sequence type=CDS   gene model=Glyma02g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTCTCACTCTCTCCAACTTCACATCGAGTTCCTTCCACAATTCCCACTTTGAATTCCGCTAAACTATCATCCACTAAGGCCACCAAGTCACAACAACCTTTGTTCTTAAGATTTTCCAAACACTTCAACTCAATTGGGTTGCACCATCACAGTCACAGATGCTGCTCAAATGCTGTTCCCGAGAGACCCCAGAGACCCAGTTCCATAAGGGCTTGCACTGGAGTTGGAGCTTCTGGATCTGATCGTCCATTAGCTGAAAGACTTTTAGATCTGAAAGATGCTTGTTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCTGCTGGCCTGTCAATTGTGGGGTTGAACTTTGGGCCCTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTTCGGGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGCTTTCAGGCGTTGGTTACTCATACCGGCTCATACGATTTTTGCAATAAGCTTGATTTACCAGGCATGGATATTAGAACAAGCAAATTATACCAAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAG

Predicted protein sequences of Glyma02g26820

Limit To All Plant Sequences

>Glyma02g26820.1   sequence type=predicted peptide   gene model=Glyma02g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSLSPTSHRVPSTIPTLNSAKLSSTKATKSQQPLFLRFSKHFNSIGLHHHSHRCCSNAVPERPQRPSSIRACTGVGASGSDRPLAERLLDLKDACWRFLRPHTIRGTALGSFALVARALIENTNLIKWSLFFKAFCGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVIFFAAAGLSIVGLNFGPFIFSLYTLGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRKYQISTFATKLGVRNIAFLGSGILLVNYIVSVLAAIYMPQAFRRWLLIPAHTIFAISLIYQAWILEQANYTKDAISGFYRFIWNLFYAEYAIFPFI*

>Glyma02g26820.2   sequence type=predicted peptide   gene model=Glyma02g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSLSPTSHRVPSTIPTLNSAKLSSTKATKSQQPLFLRFSKHFNSIGLHHHSHRCCSNAVPERPQRPSSIRACTGVGASGSDRPLAERLLDLKDACWRFLRPHTIRGTALGSLVNKPYLPIAAGDLSVQSAWFLVIFFAAAGLSIVGLNFGPFIFSLYTLGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRKYQISTFATKLGVRNIAFLGSGILLVNYIVSVLAAIYMPQAFRRWLLIPAHTIFAISLIYQAWILEQANYTKDAISGFYRFIWNLFYAEYAIFPFI*

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