Glyma02g26791 - SoyBase

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Report for Sequence Feature Glyma02g26791

Feature Type:	gene_model
Chromosome:	Gm02
Start:	27819215
stop:	27824433
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g26791

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59600	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase Rpb8 \| chr3:22016629-22017923 FORWARD LENGTH=146	SoyBase	E_val: 1.00E-59	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005665	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
KOG3400	KOG	RNA polymerase subunit 8	JGI		ISS
PTHR10917	Panther	DNA-DIRECTED RNA POLYMERASE SUBUNIT RPB8	JGI		ISS
PF03870	PFAM	RNA polymerase Rpb8	JGI		ISS
UniRef100_B9SWD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative n=1 Tax=Ricinus communis RepID=B9SWD9_RICCO	SoyBase	E_val: 4.00E-59	ISS
UniRef100_C6SXH0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SXH0_SOYBN	SoyBase	E_val: 3.00E-101	ISS

Expression Patterns of Glyma02g26791

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g26791 not represented in the dataset	Glyma02g26791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g26791

Paralog	Evidence	Comments
Glyma09g15750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g26791 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g26791

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g26791

Limit To All Plant Sequences

>Glyma02g26791.2   sequence type=transcript   gene model=Glyma02g26791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGAAGAAGAAGAAGAACCTCTTCCCGGCAACCTCCTCTTAACGGCAACAATGGTGACAAATGGAAACGCCGTGTTGCCCACGGGCCATTCCTGTCTAGGCCCATTTGGAAATTCCCGAACTCCTTATCTGCTCCCTCTATTCCATGTTTTACTTTACTCTCCTCTCAGTTCTCACGCAGAGTACTGCACTGAACGAACCGTAGTCACTCGCATTGAAGCAAGAAGTGAAAAGTTTGACATGTTTATGCACCTGGACATTAATTCCGAGATATATCCGTTAAAGGTTGGTCAGAAGTTTGCTCTTGTGCTTGTTTCAACACTTAATCCTGATGGAACTCCAGACACTGGATATTATACCCAGATCAGTCGACAATCACTGGCCAACAATTTTGAATATGTCATGTATGGGAAGCTCTACAGGATAACAGAGGGTTCAGGGCGTGAAAAAGCGGAGATGAATATTTCATTTGGTGGGCTTCTGATGATGCTGAAGGGAGATACCTCTCATTGCAACAAGTTTGAGCTGGATCAGAGGTTGTATCTTCTGATAAGGAAAGTCTGAAAATTGTATGTAAAAAATAAATATGAAGATGTGAAGCCTTGTTGCAGCAAAAAGACAGCAGCTATTTCTATCTTCATGTTTGAGTACTTAAGCTGTCGATTTTCTTACTAATGCGGGTCTTCAGTAGGACCTGAAGTTTCAAAACCAAATATTTGGTGATTTGATCAAAGACTCTGGTTTTCTCACATCTTTTTCTTTACCCTCCCTTATATTTATTTTCCACTCCCTCTCTATTTACTCATCTCTCTCTCTCTCTCCTACACCTATTTCGCATCCCTCCATGGGGTGTGAAATTATTATTGCTTGATTATACTCATTCCCCTGGTGTGTATCTTTACTATTGTTTGGATAATGTATTCTTTACATTACTTATAAGAAAAGCTCATATATCAAACCATGACTTGCGGATATATGTCTTGTTCAGAATCACT

Coding sequences of Glyma02g26791

Limit To All Plant Sequences

>Glyma02g26791.1   sequence type=CDS   gene model=Glyma02g26791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGAAGAAGAAGAAGAACCTCTTCCCGGCAACCTCCTCTTAACGGCAACAATGGTGACAAATGGAAACGCCGTGTTGCCCACGGGCCATTCCTGTCTAGGCCCATTTGGAAATTCCCGAACTCCTTATCTGCTCCCTCTATTCCATGTTTTACTTTACTCTCCTCTCAGTTCTCACGCAGAGTACTGCACTGAACGAACCGTAGCCATGGTGGAGAACAATCTCTTCGAGGATATATTTAGGGTCGAAAAATTAAACCCCGATGACAAAAAATTATTCGATAAAGTCACTCGCATTGAAGCAAGAAGTGAAAAGTTTGACATGTTTATGCACCTGGACATTAATTCCGAGATATATCCGTTAAAGGTTGGTCAGAAGTTTGCTCTTGTGCTTGTTTCAACACTTAATCCTGATGGAACTCCAGACACTGGATATTATACCCAGATCAGTCGACAATCACTGGCCAACAATTTTGAATATGTCATGTATGGGAAGCTCTACAGGATAACAGAGGGTTCAGGGCGTGAAAAAGCGGAGATGAATATTTCATTTGGTGGGCTTCTGATGATGCTGAAGGGAGATACCTCTCATTGCAACAAGTTTGAGCTGGATCAGAGGTTGTATCTTCTGATAAGGAAAGTCTGA

>Glyma02g26791.2   sequence type=CDS   gene model=Glyma02g26791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGAAGAAGAAGAAGAACCTCTTCCCGGCAACCTCCTCTTAACGGCAACAATGGTGACAAATGGAAACGCCGTGTTGCCCACGGGCCATTCCTGTCTAGGCCCATTTGGAAATTCCCGAACTCCTTATCTGCTCCCTCTATTCCATGTTTTACTTTACTCTCCTCTCAGTTCTCACGCAGAGTACTGCACTGAACGAACCGTAGTCACTCGCATTGAAGCAAGAAGTGAAAAGTTTGACATGTTTATGCACCTGGACATTAATTCCGAGATATATCCGTTAAAGGTTGGTCAGAAGTTTGCTCTTGTGCTTGTTTCAACACTTAATCCTGATGGAACTCCAGACACTGGATATTATACCCAGATCAGTCGACAATCACTGGCCAACAATTTTGAATATGTCATGTATGGGAAGCTCTACAGGATAACAGAGGGTTCAGGGCGTGAAAAAGCGGAGATGAATATTTCATTTGGTGGGCTTCTGATGATGCTGAAGGGAGATACCTCTCATTGCAACAAGTTTGAGCTGGATCAGAGGTTGTATCTTCTGATAAGGAAAGTCTGA

Predicted protein sequences of Glyma02g26791

Limit To All Plant Sequences

>Glyma02g26791.1   sequence type=predicted peptide   gene model=Glyma02g26791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAEEEEEPLPGNLLLTATMVTNGNAVLPTGHSCLGPFGNSRTPYLLPLFHVLLYSPLSSHAEYCTERTVAMVENNLFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVSTLNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGDTSHCNKFELDQRLYLLIRKV*

>Glyma02g26791.2   sequence type=predicted peptide   gene model=Glyma02g26791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAEEEEEPLPGNLLLTATMVTNGNAVLPTGHSCLGPFGNSRTPYLLPLFHVLLYSPLSSHAEYCTERTVVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVSTLNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGDTSHCNKFELDQRLYLLIRKV*

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